Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., monosaccharide ABC transporter substrate-binding protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

 Score =  139 bits (351), Expect = 6e-38
 Identities = 87/266 (32%), Positives = 156/266 (58%), Gaps = 12/266 (4%)

Query: 29  VAIVLSTLNNPFFVTMKDGAEAKAKELG--YNLIV--LDSQNDPSKELSNVEDLTVRGVK 84
           VA+V+ +L N FF+TM+DGA+A  KE    ++LI   +  ++D S ++  VE +    V 
Sbjct: 37  VALVMKSLANEFFLTMEDGAKAYQKEHATEFDLISNGIKDESDTSAQIRIVEQMIASNVN 96

Query: 85  AILINPTDSDAVSNAIRIANRSKIPVLTLDRGA------SRGEVVSHIASDNVVGGEMAG 138
           A++I P DS A+   ++ A  + I V+ +D         S+   +  +  DN  G ++ G
Sbjct: 97  ALVIAPADSKALVPVLKKATDAGIKVVNIDNQLDVDVLKSKNLQIPFVGPDNRKGAKLVG 156

Query: 139 HFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQLLASQPADFDRTKGLNVM 198
            ++  K+ +  +V  +EG++ T+ A++R  GF +A+  +KM+++++Q  +++  KG  V 
Sbjct: 157 DYLAGKLTAGDEVGIIEGVSTTNNAQQRTAGFKDAMDEAKMKVVSTQSGNWEIDKGNAVA 216

Query: 199 ENLLAANPDVQAVFAQNDEMALGALRAIQASGKS--VMIVGFDGTDDGIAAVERGQLAAT 256
             +L   P+++A+ A ND MALGA+ A++A+GK+  VM+VG+D  +     ++ G++ AT
Sbjct: 217 SAMLNEYPNLKALLAGNDSMALGAVSAVRAAGKAGKVMVVGYDNINAIKPMLKDGRVLAT 276

Query: 257 VAQQPDMIGAIGIETADKMLKGEKVE 282
             Q        GIE A K++KGEKV+
Sbjct: 277 ADQYAAKQAVFGIEAALKLVKGEKVD 302