Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  136 bits (343), Expect = 6e-37
 Identities = 91/303 (30%), Positives = 160/303 (52%), Gaps = 13/303 (4%)

Query: 4   KKLTTLISAALLSTSVSFVAQAQD-TVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62
           +    L  AA ++  V   + AQD T+ I++    + ++  +  GA A  K+LG N+  L
Sbjct: 11  RAFNALAGAAFVAAMVPATSFAQDVTIPIIVKDTTSFYWQIVLAGARAAGKDLGVNVPEL 70

Query: 63  --DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120
              S++D + +++ +E+       A++I PT+  A+   +  A +S +PV+ +D GA   
Sbjct: 71  GAQSESDINGQITILENAVAGAPAAVVIAPTEFKALGKPVDEAAKS-VPVIGIDSGADSK 129

Query: 121 EVVSHIASDNVVGGEMAGHFIEAKIGS-----DAKVIQLEGIAGTSAARERGEGFMNAVK 175
              S + +DNV GG +A   + A I       + ++  +  + G  +  +R EGF++ VK
Sbjct: 130 AFTSFLTTDNVQGGRIAADGLAAAIKEATGKEEGEIAVITSLPGVGSLDQRREGFLDQVK 189

Query: 176 GSK--MQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQAS--GK 231
                ++++A + AD   T GLN+M +L+ ANP++  VFA N  MA G  +AI  +  G 
Sbjct: 190 TKYPGLKVVADKYADGQATTGLNIMTDLITANPNLVGVFASNLIMAQGVGQAIAENKLGD 249

Query: 232 SVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKV 291
            + ++GFD  +  +  ++ G LA  V Q P  +G  G++TA  + KGEKVEA +     +
Sbjct: 250 KIKVIGFDSDEKTVGFLKEGVLAGLVVQDPYRMGYDGVKTALAVSKGEKVEANVDTGANL 309

Query: 292 IAK 294
           + K
Sbjct: 310 VTK 312