Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  135 bits (339), Expect = 2e-36
 Identities = 84/290 (28%), Positives = 146/290 (50%), Gaps = 13/290 (4%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDT-VAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIV 61
           M  + TL++ ++    ++  A A++  V + + +LN P+F       E  AK+ G  +  
Sbjct: 1   MSSIKTLLAGSVALFCLTSAAMAEECKVGLTMPSLNAPYFAAQVAAVEKAAKDQGCEITT 60

Query: 62  LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS-RG 120
            DSQND SK++++VED+  +G+  +++NP D +A+  A   A ++ + V+ +D   + + 
Sbjct: 61  ADSQNDFSKQINDVEDMIAKGIDILILNPRDQEALVPAADAATKAGVKVVVMDSTLNPKA 120

Query: 121 EVVSHIASDNVVGGEMAGHFIEAKI-GSDAKVIQLEGIAGTSAARERGEGFMNA-VKGS- 177
            VV+ + S N   G + G +I  K+ G+  K++ L G  G     +R  G +   V+G  
Sbjct: 121 NVVTQVRSSNEENGRLVGDWIAKKMKGTPIKMLLLSGNQGNPGGLDRRMGVIKGIVEGQL 180

Query: 178 ------KMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGK 231
                  +Q+L     D+    GL   E+L  A+PD   V  +ND M LGA++A +A+G 
Sbjct: 181 VNEGAVNLQILGQGWGDWATDGGLKAAEDLFQAHPDANLVVGENDSMVLGAVQAAKAAGL 240

Query: 232 S--VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGE 279
              +     DG  + +  V+ G   AT    PD++G    + A K  KGE
Sbjct: 241 DGILFAAAADGQREALEMVKEGTYGATGLNDPDLVGRTAFDIAYKAFKGE 290