Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., sugar uptake ABC transporter substrate-binding protein precursor from Sinorhizobium meliloti 1021

 Score =  137 bits (346), Expect = 2e-37
 Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 13/289 (4%)

Query: 4   KKLTTLISAALLSTSVSFVAQAQDT-VAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62
           K +   + A + S + + +A A D  V I + TL  P+F      AE +AK+ G  +   
Sbjct: 3   KSIAGCMLALMASVASAGIANAADCKVGIAMYTLGAPYFAAQVAAAEDQAKKAGCEVTSA 62

Query: 63  DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA-SRGE 121
           D QND +K++++VED+  RGV  +++NP D + +  A   A  + + V+ +D    ++  
Sbjct: 63  DGQNDMTKQIADVEDMVARGVNLLILNPRDPEGLVAAADAATAAGVKVVVMDSSINTKAN 122

Query: 122 VVSHIASDNVVGGEMAGHFI-EAKIGSDAKVIQLEGIAGTSAARERGEG-FMNAVKGS-- 177
           VV+ + S N   G + G ++  A  G   K+I L G  G    R+R  G F   V+G   
Sbjct: 123 VVTQVRSSNDQNGVLVGQWLANAMKGKPMKIILLSGDKGNEVGRDRRLGVFKGLVEGQLV 182

Query: 178 -----KMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS 232
                  +++      +    GL  ME+LL A+PD   V  +ND M LGA++A++A GK+
Sbjct: 183 NDGKVSFEVVGQGWGGWAHEGGLAAMEDLLTAHPDANVVLGENDSMVLGAMKALEAQGKT 242

Query: 233 --VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGE 279
             + +   DG  + +A ++ G+  AT    PD++    ++   K + GE
Sbjct: 243 DVLALAAADGQKEALALIKEGKYGATGLNDPDLVARTAVDVGLKAVNGE 291