Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., sugar ABC transporter from Sinorhizobium meliloti 1021

 Score =  157 bits (397), Expect = 3e-43
 Identities = 94/283 (33%), Positives = 161/283 (56%), Gaps = 3/283 (1%)

Query: 4   KKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLD 63
           +++T    AA+L+ S +  A A D +AI+  + +NPFF     GAEAKAKELGY  +VL 
Sbjct: 5   RRMTITAFAAVLAASSAVPAYAADLIAIITPSHDNPFFKAEAVGAEAKAKELGYETLVLV 64

Query: 64  SQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA-SRGEV 122
             +D +K+   ++    RG KAI+++   S+A   A++ A  + +P   +DR   + G  
Sbjct: 65  HDDDANKQSQLIDTAIGRGAKAIILDNAGSEASIAAVQKAKDAGVPSFLIDREINATGVA 124

Query: 123 VSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV-KGSKMQL 181
           VS I S+N  G ++        +G     ++L G      A  R +G+ + + +  +M++
Sbjct: 125 VSQIVSNNYQGAQLGAEEFVKLMGESGNYVELLGREADLNAGIRSKGYHDVIDEYPEMKM 184

Query: 182 LASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASG-KSVMIVGFDG 240
           +A Q A++ +T+G + ME +L ANPD++ V + ND MA+GA+ A+QA+G K V++VGFDG
Sbjct: 185 VAQQSANWSQTEGYSKMETILQANPDIKGVISGNDTMAMGAIAALQAAGRKDVIVVGFDG 244

Query: 241 TDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283
           ++D   +++ G + ATV Q       + ++ A + +   K  A
Sbjct: 245 SNDVRDSIKSGGIKATVLQPAYAQAQMAVQQAHEYITTGKAPA 287