Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., ABC transporter substrate-binding protein from Pantoea sp. MT58

 Score =  134 bits (337), Expect = 3e-36
 Identities = 103/297 (34%), Positives = 157/297 (52%), Gaps = 19/297 (6%)

Query: 6   LTTLISAALLSTSVSFVAQAQD--TVAIVLSTLNNPFFVTMKDGAEAKAKELG---YNLI 60
           +T L++A L ST +   AQA++  ++ + +  L NPFFV +  GAE KA++L     N+ 
Sbjct: 7   VTGLLAATLFSTGL---AQAKELKSIGVTVGDLANPFFVQITKGAEMKARQLAGDKVNVT 63

Query: 61  VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120
           ++ S  D  +++  +++     V  I++N  DS  ++ A++ A  + I V+ +D  A   
Sbjct: 64  LVSSGYDLGQQVGQIDNFIAAKVDMIILNAADSKGIAPAVKRARDAGIVVVAVDVAADGA 123

Query: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSK-M 179
                I SDN   G MA  +I  ++ +   V+ + G    SA + R EG MN +K    +
Sbjct: 124 NAT--ITSDNTQAGAMACKYISDRLKNKGNVVIING-PPVSAVQNRVEGCMNELKTHPDI 180

Query: 180 QLLAS-QPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGA-LRAIQASGKSVMIVG 237
           +LL+S Q A   R  GL VM  LL+ANP + AVFA ND  A+GA L A QA      IVG
Sbjct: 181 KLLSSNQNAKGSREGGLEVMTGLLSANPKIDAVFAINDPTAIGADLAAKQAQRSEFFIVG 240

Query: 238 FDGTDDGIAAVER--GQLAATVAQQPDMIGAIGIETADKMLKGEKV---EAYIPVAL 289
            DG+ DG  A++R      AT AQ P ++ A  +E    +L+G+        IPV L
Sbjct: 241 VDGSPDGEEALKRKNSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPDKPVLIPVKL 297