Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., periplasmic binding protein/LacI transcriptional regulator from Klebsiella michiganensis M5al

 Score =  114 bits (286), Expect = 2e-30
 Identities = 80/272 (29%), Positives = 137/272 (50%), Gaps = 16/272 (5%)

Query: 6   LTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQ 65
           L T +SAA+ S     V  A  TV        + +     + A+ +A + G  L + D+Q
Sbjct: 7   LVTAVSAAMSS----MVMAAPLTVGFSQVGSESGWRAAETNVAKEEAAKRGITLKIADAQ 62

Query: 66  NDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRG---ASRGEV 122
                ++  V     +GV AI I P  +      ++ A  +KIPV  LDR      +   
Sbjct: 63  QKQENQIKAVRSFIAQGVDAIFIAPVVATGWEPVLKEAKEAKIPVFLLDRSIDVKDKDLY 122

Query: 123 VSHIASDNVVGGEMAGHFIEAKI-GSDAKVIQLEGIAGTSAARERGEGFMNAV-KGSKMQ 180
           ++ + ++NV+ G++ G ++   + G    V++L+G  G S A +R +GF  A+ K S ++
Sbjct: 123 MTTVTANNVLEGQLIGKWLVKTVDGKPCNVVELQGTVGASVAIDRKKGFAEAISKASNIK 182

Query: 181 LLASQPADFDRTKGLNVMENLLAA---NPDVQAVFAQNDEMALGALRAIQAS----GKSV 233
           ++ SQ  DF R+KG  VME+ + A     ++  V+A ND+M +GA++AI+ +    GK +
Sbjct: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDI 242

Query: 234 MIVGFDGTDDGIAAVERGQLAATVAQQPDMIG 265
           +    DG  D   A+  G+  A+V   P+M G
Sbjct: 243 LTGSIDGVPDIYKAMMAGEANASVELTPNMAG 274