Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ABC transporter periplasmic-binding protein YtfQ from Enterobacter sp. TBS_079

 Score =  113 bits (282), Expect = 6e-30
 Identities = 77/272 (28%), Positives = 142/272 (52%), Gaps = 16/272 (5%)

Query: 6   LTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQ 65
           L T +SAA+ S +++    A  TV        + +     + A+++A++ G  L + D+Q
Sbjct: 7   LVTAVSAAMSSMAMA----APLTVGFSQVGSESGWRAAETNVAKSEAQKRGITLKIADAQ 62

Query: 66  NDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRG---ASRGEV 122
                ++  V     +GV AI I P  +      ++ A  ++IPV+ LDR      +   
Sbjct: 63  QKQENQIKAVRSFIAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVVLLDRSIDVKDKSLY 122

Query: 123 VSHIASDNVVGGEMAGHFIEAKI-GSDAKVIQLEGIAGTSAARERGEGFMNAV-KGSKMQ 180
           ++ + ++NV+ G++ G ++  ++ G    V++L+G  G S A +R +GF  A+ K   ++
Sbjct: 123 MTTVTANNVLEGQLIGDWLVKQVDGKPCNVVELQGTVGASVAIDRKKGFAEAIAKAPNIK 182

Query: 181 LLASQPADFDRTKGLNVMENLLAA---NPDVQAVFAQNDEMALGALRAIQAS----GKSV 233
           ++ SQ  DF R+KG  VME+ + A     ++  V+A ND+M +GA++AI+ +    GK +
Sbjct: 183 IIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLNPGKDI 242

Query: 234 MIVGFDGTDDGIAAVERGQLAATVAQQPDMIG 265
           +    DG  D   A+  G+  A+V   P+M G
Sbjct: 243 LTGSIDGVPDIYKAMMDGEANASVELTPNMAG 274