Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., inositol ABC transporter, periplasmic inositol-binding protein IbpA from Caulobacter crescentus NA1000

 Score =  140 bits (354), Expect = 3e-38
 Identities = 85/277 (30%), Positives = 155/277 (55%), Gaps = 12/277 (4%)

Query: 25  AQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQNDPSKELSNVEDLTVRGVK 84
           A+  V +  + L+ PFFV M+   E +A +LG  + VLD+QN+ SK++S+++   V+G K
Sbjct: 36  AEAEVVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQISDLQAAAVQGAK 95

Query: 85  AILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGE-VVSHIASDNVVGGEMAGHFIEA 143
            +++ PTDS A++ A        + V+++DR  + G+  V H+ +DNV GG     ++  
Sbjct: 96  VVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGKTAVPHVGADNVAGGRAMADWVVK 155

Query: 144 KIGSDAKVIQLEGIAGTSAARERGEGFMN--AVKGSKMQLLASQPADFDRTKGLNVMENL 201
              + A+V+ +    G+S++ ER +G  +  A  G   +++  Q A+  R + L V +N+
Sbjct: 156 TYPAGARVVVITNDPGSSSSIERVKGVHDGLAAGGPAFKIVTEQTANSKRDQALTVTQNI 215

Query: 202 LAANPDV--QAVFAQNDEMALGALRAIQASG---KSVMIVGFDGTDDGIAAVERGQLAAT 256
           L +  D     +   ND+MA+GAL A++A+G     V ++GFD   + +A ++ G++ AT
Sbjct: 216 LTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKVIGFDAIPEALARIKAGEMVAT 275

Query: 257 VAQQPDM-IGAIGIETADKMLKGEKVEAYIPVALKVI 292
           V Q P + I     +  DK+  G  +++   V+LK +
Sbjct: 276 VEQNPGLQIRTALRQAVDKIKSGAALKS---VSLKPV 309