Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

 Score =  120 bits (300), Expect = 5e-32
 Identities = 86/293 (29%), Positives = 141/293 (48%), Gaps = 15/293 (5%)

Query: 1   MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI 60
           M+  K+ T +    +S + ++      TV        + +  +  +  +A+AK+ G +L 
Sbjct: 1   MKHNKIITALGLWAVSATCAYAT----TVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLK 56

Query: 61  VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120
             D+Q     ++  V     +GV AI+I P         ++ A R+KIPV+ +DR     
Sbjct: 57  FADAQQKQENQIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVD 116

Query: 121 E---VVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKG- 176
           +    ++ IASD    G   G ++  K   +  + +L+G  G +AA +R  GF   +   
Sbjct: 117 DDSLFLTRIASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANY 176

Query: 177 SKMQLLASQPADFDRTKGLNVMENLLAA--NPDVQAVFAQNDEMALGALRAIQAS----G 230
              +++ SQ  +F R KG  VME  L A     + AV++ NDEMALGA++AI+ +    G
Sbjct: 177 PNAKIVRSQTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPG 236

Query: 231 KSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283
           K ++IV  DG  D   A+  G + ATV   P  +G    +  D  LKG K +A
Sbjct: 237 KDILIVSVDGVPDYFKAMADGDVNATVELSP-YLGGPAFDAIDAYLKGNKDQA 288