Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., arabinose ABC transporter permease from Pseudomonas fluorescens FW300-N2C3

 Score =  223 bits (569), Expect = 4e-63
 Identities = 119/316 (37%), Positives = 187/316 (59%), Gaps = 4/316 (1%)

Query: 14  NTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAV 73
           N     RK L  + +L +   L+A + + V+ + +  NF +  N+  +    S   I A 
Sbjct: 6   NALPTARKPLDLRRFLDDWVMLLAAIGIFVLCTLMIDNFLSPLNMRGLGLAISTTGIAAC 65

Query: 74  GMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAK 133
            M   + +   DLSVGSV+A  G  AA ++     V + V  AL  G  +G I+GI+IAK
Sbjct: 66  TMLYCLASGHFDLSVGSVIACAGVVAAVVMRDTNSVFLGVSAALAMGLIVGLINGIVIAK 125

Query: 134 GKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVV 193
            +V A I TL TM ++RG+  ++ +G+ +      + ++F  FG G   G+PVP+ + + 
Sbjct: 126 LRVNALITTLATMQIVRGLAYIFANGKAVGV----SQESFFVFGNGQLFGVPVPILITIA 181

Query: 194 VFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSR 253
            F    +LLN+T +GR   A+GGN+ A  L+G+NVDR KI ++A+ GL+ ALAG+I+ SR
Sbjct: 182 CFLFFGWLLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGLIGALAGVILASR 241

Query: 254 LSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYY 313
           ++S QP  G G+EL  I+A VLGG SL GG G I   + G LI+  + NA+NL ++ ++Y
Sbjct: 242 MTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFY 301

Query: 314 QMIAKAVVILLAVLVD 329
           Q + +  ++LLAV++D
Sbjct: 302 QYVIRGSILLLAVVID 317