Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., monosaccharide ABC transporter membrane protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

 Score =  211 bits (537), Expect = 2e-59
 Identities = 126/291 (43%), Positives = 178/291 (61%), Gaps = 24/291 (8%)

Query: 58  LLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAM------------ 105
           L+ ++ Q S+  ++A+G+T VI+T GIDLS GSVLAL    AA+L               
Sbjct: 57  LVLMILQVSIIGLLAIGVTQVIITTGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLT 116

Query: 106 EVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTG 165
           ++PV + V   L  G   GAI+G IIA   +  FIATL  M   RG+   YT+G+P+S  
Sbjct: 117 DLPVWIPVVVGLGVGLLAGAINGSIIAITGIPPFIATLGMMVSARGLARFYTEGQPVSM- 175

Query: 166 FTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSG 225
               +D++   G G    +PV ++L+V V       L +T++G+Y YA+GGN  A R SG
Sbjct: 176 ---LSDSYTAIGQG---AMPVIIFLVVAVIFHI--ALRYTKYGKYTYAIGGNMQAARTSG 227

Query: 226 INVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKG 285
           INV R  + VY+I GLLA LAG++ ++R ++ Q   GM YELDAIAA V+GGTSL GG G
Sbjct: 228 INVKRHLVIVYSIAGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLSGGVG 287

Query: 286 RIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVD---NKNK 333
           RI GT+IGALI+G + +    + V +Y Q I K ++I++AV++D   NK K
Sbjct: 288 RITGTVIGALILGVMASGFTFVGVDAYVQDIIKGLIIVVAVVIDQYRNKRK 338