Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., L-arabinose ABC transporter membrane protein from Pseudomonas syringae pv. syringae B728a

 Score =  215 bits (547), Expect = 1e-60
 Identities = 111/299 (37%), Positives = 178/299 (59%), Gaps = 4/299 (1%)

Query: 35  LIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94
           L+A + + ++ +    NF +  N+  +    S   I A  M   + +   DLSVGSVLA 
Sbjct: 34  LLAAVGIFLLCAVFIDNFMSPLNMRGLGLAISTVGIAACTMLFCLASGHFDLSVGSVLAC 93

Query: 95  CGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTM 154
            G  A+ ++     V + V  AL  G  +G I+GI+IAK ++ A I TL TM ++RG+  
Sbjct: 94  SGVIASIVIRDTDSVFLGVSAALALGLVVGLINGIVIAKLRINALITTLATMQIVRGLAY 153

Query: 155 VYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAV 214
           ++++G+ +     D    F  FG G   G+PVP+ + +  F    +LLN+T +GR   A+
Sbjct: 154 IFSNGKAVGVSNED----FFIFGNGQVYGVPVPILITIACFIFFGWLLNYTTYGRNTMAI 209

Query: 215 GGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVV 274
           GGN+ A  L+G++VDR KI ++A+ GL+ ALAG+++ SR++S QP  G G+EL  I+A V
Sbjct: 210 GGNQEAALLAGVHVDRTKIIIFAVHGLVGALAGVVLASRMTSGQPMIGQGFELTIISACV 269

Query: 275 LGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVDNKNK 333
           LGG SL GG G I   + G LI+  + NA+NL ++ ++YQ + +  ++LLAV++D   +
Sbjct: 270 LGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGTILLLAVIIDRMKR 328