Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., permease from Sinorhizobium meliloti 1021

 Score =  260 bits (665), Expect = 3e-74
 Identities = 144/321 (44%), Positives = 200/321 (62%), Gaps = 12/321 (3%)

Query: 21  KKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVIL 80
           +K   K  + +   LIAL+ L+  ++F   NF T+DNL N+ RQ++  AI+AVG T VIL
Sbjct: 19  RKTKLKAVVFQAGPLIALVLLMAYLAFATSNFLTLDNLSNVARQSAFVAILAVGQTFVIL 78

Query: 81  TAGIDLSVGSVLALCGAFAATLVAME----------VPVLVAVPTALLAGAALGAISGII 130
           T GIDLSV ++ AL  +  A L+             VP  VA+   +L G A GA++G +
Sbjct: 79  TGGIDLSVAAIAALSASITAVLLTQPLVLFGIDFGFVPPPVAILIGILIGMAAGALNGWL 138

Query: 131 IAKGKVQAFIATLVTMTLLRGVTMVYTDGRPIST--GFTDTADTFAWFGTGYTLGIPVPV 188
           I+K K+  FIATL TMT  RG  ++ TDG P+ +        ++  W G G   G+PV  
Sbjct: 139 ISKFKIPDFIATLGTMTAFRGAALLVTDGLPVPSFNAGRQLPESLIWVGGGQLFGVPVSA 198

Query: 189 WLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGI 248
            + ++  A  WY+L +T  GR +YAVGGN +A   SGI++ R KI  YAI GLLAA+AGI
Sbjct: 199 LIALLCAAAGWYVLRYTALGRAIYAVGGNRAAAHSSGISISRTKIMTYAISGLLAAIAGI 258

Query: 249 IVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLD 308
           I+  RL+SA      G EL +IA+VV+GGT+L GG+G + G++IGA IIG L N LNLLD
Sbjct: 259 ILVGRLNSANALMADGEELRSIASVVIGGTNLFGGEGGVWGSIIGAAIIGVLGNGLNLLD 318

Query: 309 VSSYYQMIAKAVVILLAVLVD 329
           VS ++Q IA+ VVI++ V+ D
Sbjct: 319 VSPFWQRIAQGVVIVVVVIFD 339