Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  239 bits (610), Expect = 7e-68
 Identities = 139/324 (42%), Positives = 198/324 (61%), Gaps = 9/324 (2%)

Query: 12  MTNTTS----DNRKKLLSKEWLIEQKSLIAL-LFLVVVVSFLNPNFFTVDNLLNILRQTS 66
           MT+TT       +K  +    ++++   +A+ L LV V ++ + +F T  NLLN+LRQ +
Sbjct: 1   MTHTTDTVMPQEQKGFVDYHSIVQRFGTLAIFLVLVAVATWWSDSFLTRGNLLNVLRQVA 60

Query: 67  VNA-IIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAM-EVPVLVAVPTALLAGAALG 124
             A I+AVGM  VILT GIDLSVGSV+AL         AM        +   LL GAA G
Sbjct: 61  STAGIMAVGMLFVILTRGIDLSVGSVMALGSVLTGYFCAMLGYGTGATIFLVLLCGAACG 120

Query: 125 AISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGI 184
            ++G  IA  ++ +F+ +L  M + RG++++ ++GRPI    +D    F+ FG+G+ LGI
Sbjct: 121 LVTGGFIAYLRLPSFVMSLAMMAVARGLSLIISEGRPIP--LSDAGAAFSSFGSGFVLGI 178

Query: 185 PVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAA 244
           P PV LM  ++     +LN TRFGR + A+G NE A RLSGI V R  + VY I GLLA 
Sbjct: 179 PQPVILMFAIYIAGGVVLNFTRFGRVITAIGSNEEAVRLSGIAVPRYIVAVYVISGLLAG 238

Query: 245 LAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNAL 304
           LAGII  SR        G+G EL+ IAAVV+GG SLMGGKG ++ TL+GAL++G + N +
Sbjct: 239 LAGIIAASRTGVGSAQVGIGAELNVIAAVVIGGASLMGGKGGVINTLLGALVMGIITNIM 298

Query: 305 NLLDVSSYYQMIAKAVVILLAVLV 328
           NL  V  Y+Q +    +I++A+L+
Sbjct: 299 NLAGVPGYHQQVYMGAIIVVAMLL 322