Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., L-arabinose transporter permease from Sinorhizobium meliloti 1021

 Score =  219 bits (557), Expect = 9e-62
 Identities = 114/307 (37%), Positives = 181/307 (58%), Gaps = 4/307 (1%)

Query: 24  LSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAG 83
           L K  L EQ  L+      VVV+   PNF T  N+L +L+      ++A  M   + +  
Sbjct: 5   LKKLLLGEQGLLVIFAAAFVVVALTVPNFLTERNMLGLLQSVVTIGVVACTMMFCLASRD 64

Query: 84  IDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATL 143
            DLSVGS +A  G  A         +++ +  AL  G  +G  +GI+IA+ ++ A I TL
Sbjct: 65  FDLSVGSTVAFSGMVAVMASNATGSIVLGLLAALACGGIVGLANGIVIARFRINALITTL 124

Query: 144 VTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLN 203
            TM ++RG  ++ +DGR +  G  D    F        L +P P+W+M + F    +LLN
Sbjct: 125 ATMQIVRGFALIASDGRAV--GINDPV--FYQLSLSKFLTVPTPIWVMALFFIVFGFLLN 180

Query: 204 HTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGM 263
            T FG+   A+GGN  A+RL+G++V R++I ++A+ GL+ A+AG+++ SR++S QP A  
Sbjct: 181 RTVFGKNTLAIGGNPEASRLAGVDVARMRIWIFALQGLVCAVAGVLLASRITSGQPNAAT 240

Query: 264 GYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVIL 323
           G EL  I+A VLGG SL GG+  + G ++G LI+G   N +NLL++ ++YQ + + +++L
Sbjct: 241 GLELSVISACVLGGVSLAGGRATMTGVVVGVLIMGIAENVMNLLNIQAFYQYVVRGLILL 300

Query: 324 LAVLVDN 330
           +AVL+DN
Sbjct: 301 IAVLLDN 307