Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  276 bits (705), Expect = 7e-79
 Identities = 153/292 (52%), Positives = 194/292 (66%), Gaps = 14/292 (4%)

Query: 52  FFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEV---- 107
           F TV+NL+ IL Q SVN ++AVGMT V+++AGIDLSVGSVLA  G  AA++    V    
Sbjct: 48  FLTVNNLMLILHQISVNGVLAVGMTFVVISAGIDLSVGSVLAFSGMMAASMATRSVGVTP 107

Query: 108 -----PVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPI 162
                PV+  +  AL  GA  G +SG IIA+ ++QAFIATL  +   RG TM  T G PI
Sbjct: 108 WSDTYPVIFPIIAALGVGALCGGLSGWIIARFRIQAFIATLGMLLAARGFTMSVTGGNPI 167

Query: 163 STGFTDTADTFAWFGTGYTLG-IPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESAT 221
           S    D    F WFGTG     IPVPV ++ +VF  AW +LN T FGRYVYAVGGNE + 
Sbjct: 168 SGLSPD----FRWFGTGKLFEVIPVPVVILALVFLLAWVILNKTVFGRYVYAVGGNEKSA 223

Query: 222 RLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLM 281
           R SGIN   + I VY + G LA +AG+I+T++  SAQ +AG  YELDAIAAVV+GG SL 
Sbjct: 224 RTSGINTGAILIWVYVVAGFLAGVAGVILTAKTGSAQTSAGSSYELDAIAAVVIGGASLA 283

Query: 282 GGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVDNKNK 333
           GG GR+ GT  GALIIG +NN L++L V S+YQ+I K  +I++AV++D   K
Sbjct: 284 GGVGRLTGTFFGALIIGVMNNGLDILGVQSFYQLIIKGGLIVVAVILDPSRK 335