Pairwise Alignments

Query, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., L-arabinose ABC transporter permease AraH from Klebsiella michiganensis M5al

 Score =  210 bits (535), Expect = 3e-59
 Identities = 119/318 (37%), Positives = 184/318 (57%), Gaps = 9/318 (2%)

Query: 15  TTSDNRKKLLSKEWLIEQKSLI---ALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAII 71
           TTS   +   S   + +Q  ++   A+LF+  V+    PNF +  N+  +    S++ ++
Sbjct: 5   TTSGTTRSAFSFSRVWDQFGMLVVFAVLFIGCVIFV--PNFASFINMKGLGLAISMSGMV 62

Query: 72  AVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIII 131
           A GM   + +   DLSV SV+A  G   A ++ +   + + +   LL GA  G ++G +I
Sbjct: 63  ACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESMWIGIGAGLLLGALSGLVNGFVI 122

Query: 132 AKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLM 191
           A+ K+ A I TL TM ++RG+  + +DG+ +  G  D  + F   G     G+P P+WL 
Sbjct: 123 ARLKINALITTLATMQIVRGLAYIISDGKAV--GIED--ERFFTLGYANWFGLPAPIWLT 178

Query: 192 VVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVT 251
           V        LLN T FGR   A+GGNE A RL+G+ V R KI ++ + GL++A AGII+ 
Sbjct: 179 VACLIVFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAAAGIILA 238

Query: 252 SRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSS 311
           SR++S QP   +GYEL  I+A VLGG SL GG G+I   + G LI+G + NA+NLL++S 
Sbjct: 239 SRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISP 298

Query: 312 YYQMIAKAVVILLAVLVD 329
           + Q + + V++L AV+ D
Sbjct: 299 FSQYVVRGVILLAAVIFD 316