Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., xylose ABC transporter ATP-binding protein from Pseudomonas syringae pv. syringae B728a

 Score =  405 bits (1040), Expect = e-117
 Identities = 221/509 (43%), Positives = 330/509 (64%), Gaps = 12/509 (2%)

Query: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDA- 59
           M+  +L ++ I K+F GVKAL+   + V PG  + L GENGAGKSTLMKVL+ +Y     
Sbjct: 1   MSDYLLQMNGIVKSFGGVKALNGIDITVKPGECVGLCGENGAGKSTLMKVLSAVYPYGTW 60

Query: 60  -GSIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDE 118
            G I + GQP+  +   +++ AGI IIHQEL L+P L++AENIF+G E+T P GR+ +  
Sbjct: 61  EGEILWDGQPLKAQSISETEAAGIVIIHQELTLVPDLSVAENIFMGHELTLPGGRMNYPA 120

Query: 119 MHRKADQLLARLNVKHSAKTL-LGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTE 177
           M  +A+ L+  L V      L + +   G QQ+VEIAKAL+ +++++I+DEP+ ALT +E
Sbjct: 121 MMHRAESLMRELKVPDMNVALPVSQYGGGYQQLVEIAKALNKKARLLILDEPSSALTRSE 180

Query: 178 TESLFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEM 237
            E L ++I++L+ +G   VYISH+L E+  +CD ++V+RDGK I    + D +   +I  
Sbjct: 181 IEVLLDIIHDLKAKGVACVYISHKLDEVAAVCDTVSVIRDGKHIATTAMADMDIPKIITQ 240

Query: 238 MVGRKLEEQYPRIAAQQGDISLEVIGLT--------GSGVHDVSFTLKKGEILGVSGLMG 289
           MVGR++   YP      G++  E   +T           V DVSF L++GEILG++GL+G
Sbjct: 241 MVGREMSNLYPTEPHDVGEVIFEARHITCYDVDNPRRKRVDDVSFLLRRGEILGIAGLVG 300

Query: 290 AGRTELMKVIYGALPSE-RGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSV 348
           AGRTEL+  ++GA P    G + LNG+ ++  +P   +  G+  + EDRK  G++  L V
Sbjct: 301 AGRTELVSALFGAYPGRYSGEVWLNGQAIDTRTPLKSIRAGVCMVPEDRKRQGIIPDLGV 360

Query: 349 KENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAK 408
            +N++L  LD  S   +I    E+ ++D  I   ++KT S    I +LSGGNQQK  +AK
Sbjct: 361 GQNITLAVLDSYSNMTRIDAEAELGSIDREISRMHLKTASPFLPITSLSGGNQQKAVLAK 420

Query: 409 GLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVM 468
            L+T+P+VLILDEPTRGVDVGAK EIY+L+    AEG+SII+VSSE+ EVLG+SDR+LV+
Sbjct: 421 MLLTRPRVLILDEPTRGVDVGAKYEIYKLMGALAAEGVSIIMVSSELAEVLGVSDRVLVI 480

Query: 469 HEGRISGEFMASEADQEKLMACAVGRNPA 497
            +G++ G+F+  +  QE+++A A+  + A
Sbjct: 481 GDGQLRGDFINHDLTQEQVLAAALSHSDA 509