Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., L-arabinose ABC transporter ATP-binding protein from Pseudomonas syringae pv. syringae B728a

 Score =  405 bits (1041), Expect = e-117
 Identities = 226/496 (45%), Positives = 324/496 (65%), Gaps = 4/496 (0%)

Query: 2   TQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGS 61
           T   L  + I K FPGVKAL   S    PG V ALMGENGAGKSTL+K+L G Y  ++G+
Sbjct: 10  TGGALRFNGIGKVFPGVKALSDISFEARPGSVHALMGENGAGKSTLLKILGGSYQPNSGT 69

Query: 62  IEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHR 121
           ++   Q   FK   +S  AG+++IHQEL+L+P++T+AEN+ LG  M + FG I    M+R
Sbjct: 70  LQIGEQSYQFKSTAESIAAGVAVIHQELHLVPEMTVAENLLLGH-MPNRFGLINRGAMYR 128

Query: 122 KADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESL 181
           +A +LL  L  +    T LG+LSLG++Q+VEIAKA+S  + VI  DEPT +L+  E + L
Sbjct: 129 RAGELLKGLADEIDPHTRLGDLSLGQRQLVEIAKAMSRNAHVIAFDEPTSSLSAREIDRL 188

Query: 182 FNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGEC-RVCDTNEDGLIEMMVG 240
             +I  LR++G  I+Y+SHR++EIF +CD +TV +DG+F+    ++ D + D L+  MVG
Sbjct: 189 MAIIVRLRDEGRVILYVSHRMEEIFRVCDAVTVFKDGRFVKTFEQMADLDHDRLVTCMVG 248

Query: 241 RKLEEQYPRIAAQQGDISLEVIGLTGSGVHD-VSFTLKKGEILGVSGLMGAGRTELMKVI 299
           R ++  Y     Q    SL V GL G G+H+ V+F ++KGE+LG  GL+GAGRTEL +++
Sbjct: 249 RDIQNIYNYRPRQHQGPSLRVTGLLGPGLHEPVTFAVQKGEVLGFFGLVGAGRTELFRLL 308

Query: 300 YGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQ 359
            G   S  G + L+G+ +   SP+D +  GI    EDRK +G+V   SV EN+++ A  +
Sbjct: 309 SGLTRSSAGTLQLDGKPLTLKSPRDAIEAGILLCPEDRKKEGIVPLSSVAENINIGARPR 368

Query: 360 -LSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418
            ++ G  I+   E       I+  N+KTPS EQ I  LSGGNQQK  + + L    KVL+
Sbjct: 369 HVNLGCLIQGRWERDNARSQIKSMNVKTPSPEQQIMFLSGGNQQKAILGRWLSMPMKVLL 428

Query: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFM 478
           LDEPTRG+DVGAK EIY++I+   A+G+++I+VSS++ EV+G+SDRILVM EG I+GE  
Sbjct: 429 LDEPTRGIDVGAKSEIYEIIHNLAADGIAVIVVSSDLMEVMGISDRILVMSEGAITGELN 488

Query: 479 ASEADQEKLMACAVGR 494
             EAD+ +L+  A+ R
Sbjct: 489 RDEADESRLLQLALPR 504



 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 32/264 (12%)

Query: 245 EQYPRIAAQQGDISLEVIGLTGSGVH---DVSFTLKKGEILGVSGLMGAGRTELMKVIYG 301
           EQY    A  G +    IG    GV    D+SF  + G +  + G  GAG++ L+K++ G
Sbjct: 6   EQY----ATGGALRFNGIGKVFPGVKALSDISFEARPGSVHALMGENGAGKSTLLKILGG 61

Query: 302 ALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQ-- 359
           +     G + +  ++    S  + +A G+A I ++     LV  ++V EN+ L  +    
Sbjct: 62  SYQPNSGTLQIGEQSYQFKSTAESIAAGVAVIHQELH---LVPEMTVAENLLLGHMPNRF 118

Query: 360 --LSKGVQIRHADEVIA-----VDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMT 412
             +++G   R A E++      +D   RL            G+LS G +Q V IAK +  
Sbjct: 119 GLINRGAMYRRAGELLKGLADEIDPHTRL------------GDLSLGQRQLVEIAKAMSR 166

Query: 413 KPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGR 472
              V+  DEPT  +       +  +I + + EG  I+ VS  M E+  + D + V  +GR
Sbjct: 167 NAHVIAFDEPTSSLSAREIDRLMAIIVRLRDEGRVILYVSHRMEEIFRVCDAVTVFKDGR 226

Query: 473 ISGEF-MASEADQEKLMACAVGRN 495
               F   ++ D ++L+ C VGR+
Sbjct: 227 FVKTFEQMADLDHDRLVTCMVGRD 250