Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  404 bits (1038), Expect = e-117
 Identities = 207/489 (42%), Positives = 310/489 (63%), Gaps = 1/489 (0%)

Query: 6   LALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQ 65
           +AL  I K+FPGV+AL   SL +YPG V AL+GENGAGKSTL+K+LTGIY  DAG+I   
Sbjct: 5   IALEGISKSFPGVRALSDVSLALYPGSVTALVGENGAGKSTLVKILTGIYQPDAGTIRLG 64

Query: 66  GQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKADQ 125
               +F     +  AG++ IHQE  L  +L++AENIFLG    + FG I W +++  A  
Sbjct: 65  DTETTFPTALAASRAGVTAIHQETVLFDELSVAENIFLGHAPRNRFGLIDWKQLNADAQA 124

Query: 126 LLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVI 185
           LL R          L +L + ++ +V IA+ALS +++V+IMDEPT AL+  E   L+++I
Sbjct: 125 LLGRAGADFDPTIRLRDLGIAKKHLVAIARALSVDARVVIMDEPTAALSHKEIHELYDLI 184

Query: 186 NELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLEE 245
             L+  G  +++ISH+  EIF I D  TV RDG  IGE  + D ++D L+ MMVGR +  
Sbjct: 185 ERLKADGKAVLFISHKFDEIFRIADRYTVFRDGAMIGEGLIADVSQDDLVRMMVGRAVGS 244

Query: 246 QYPRIAAQQGDISLEVIGLT-GSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALP 304
            YP+     G   L V G    +   D++F L++GEILG  GL+GAGR+E M+ + G   
Sbjct: 245 VYPKKEVTIGQPVLTVSGYRHPTEFEDINFELRRGEILGFYGLVGAGRSEFMQSLIGITR 304

Query: 305 SERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGV 364
              G + L+G  +   SP + +  GI Y+ E+R   G ++G+ + +N++L +L   S+  
Sbjct: 305 PSAGAVKLDGEVLVIRSPAEAIRAGIVYVPEERGRQGAIIGMPIFQNVTLPSLSHTSRSG 364

Query: 365 QIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTR 424
            +R A+E     ++    +++  + +Q +G LSGGNQQKV IAK L T+PKV+ILDEPT+
Sbjct: 365 FLRLAEEFALAREYTSRLDLRAAALDQDVGTLSGGNQQKVVIAKWLATRPKVIILDEPTK 424

Query: 425 GVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQ 484
           G+D+G+K  ++  +++  A+G+S+I+VSSE+PE++GMSDR++VM EGR++G +  SE   
Sbjct: 425 GIDIGSKAAVHAFMSELAAQGLSVIMVSSEIPEIMGMSDRVIVMREGRVAGRYERSELTA 484

Query: 485 EKLMACAVG 493
           EKL+  A G
Sbjct: 485 EKLVRAAAG 493



 Score = 84.3 bits (207), Expect = 9e-21
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 22/248 (8%)

Query: 257 ISLEVIGLTGSGVH---DVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLN 313
           I+LE I  +  GV    DVS  L  G +  + G  GAG++ L+K++ G    + G I L 
Sbjct: 5   IALEGISKSFPGVRALSDVSLALYPGSVTALVGENGAGKSTLVKILTGIYQPDAGTIRLG 64

Query: 314 GRTVNPVSPQDGLANGIAYISEDRK-------GDGLVLGLSVKENMSLCALDQLSKGVQI 366
                  +       G+  I ++          + + LG + +    L    QL+   Q 
Sbjct: 65  DTETTFPTALAASRAGVTAIHQETVLFDELSVAENIFLGHAPRNRFGLIDWKQLNADAQA 124

Query: 367 RHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGV 426
                    D  IRL             +L    +  VAIA+ L    +V+I+DEPT  +
Sbjct: 125 LLGRAGADFDPTIRL------------RDLGIAKKHLVAIARALSVDARVVIMDEPTAAL 172

Query: 427 DVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEK 486
                 E+Y LI + KA+G +++ +S +  E+  ++DR  V  +G + GE + ++  Q+ 
Sbjct: 173 SHKEIHELYDLIERLKADGKAVLFISHKFDEIFRIADRYTVFRDGAMIGEGLIADVSQDD 232

Query: 487 LMACAVGR 494
           L+   VGR
Sbjct: 233 LVRMMVGR 240