Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., sugar uptake ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  399 bits (1024), Expect = e-115
 Identities = 225/495 (45%), Positives = 321/495 (64%), Gaps = 9/495 (1%)

Query: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEY 64
           IL ++ + K+F  V AL    L V  GRV  L+GENGAGKSTLMK+L G++   +G I  
Sbjct: 9   ILKITDVTKSFGQVAALKGMRLEVRRGRVHTLLGENGAGKSTLMKILAGVHGATSGEIVL 68

Query: 65  QGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKAD 124
            GQ      P+++   G++I+ QEL+L   LT+AENI   RE    FG I    +  KA 
Sbjct: 69  DGQAYRPANPQEAASLGLAIVFQELSLCNNLTVAENILATREPRR-FGFINDKALVAKAH 127

Query: 125 QLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNV 184
           +++A L +       +G LS+ ++Q+VEIAK LS ++KV+I+DEPT +L+D+E E LF +
Sbjct: 128 RIVADLRLPIDVTEKVGNLSIAQRQLVEIAKGLSHDAKVVILDEPTSSLSDSEAEILFEI 187

Query: 185 INELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLE 244
           I  LR++G  I+YISHR++EI  + DDITV+RDG+++      +   + LI +MVGR+++
Sbjct: 188 IGRLRQRGAAIIYISHRMEEIMRLSDDITVIRDGEYVSTHARDEVTIETLIALMVGRRMD 247

Query: 245 EQYP----RIAAQQGDISLEVIGLTGSG-VHDVSFTLKKGEILGVSGLMGAGRTELMKVI 299
           E YP     +AA +  + L V  LT  G   DVSF ++ GEILG  GL+G+GR+E+M  +
Sbjct: 248 EIYPPPVHHVAADRAPV-LAVDRLTREGEFQDVSFDVRAGEILGFFGLVGSGRSEVMNAL 306

Query: 300 YGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQ 359
           +G + S  G + L+G  V   SP   +A G+ +++E+RK +GLVLG SV+ N+S+ AL  
Sbjct: 307 FG-MKSAAGTVRLDGEVVRFRSPDQAIARGVGFVTENRKEEGLVLGHSVEWNISMAALAD 365

Query: 360 LSKGVQ-IRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418
            + G+  IR+  E  A  + +   +IKT S E   G LSGGNQQK+ +AK L+T+PKVLI
Sbjct: 366 FAGGLGFIRNGAERAAASEQVGKLSIKTNSLETPAGALSGGNQQKIVLAKWLLTRPKVLI 425

Query: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFM 478
           LDEPTRGVDVGAK EIY++I +  AEG +I+L+SS++PEVLGMSDR++VMHEG       
Sbjct: 426 LDEPTRGVDVGAKFEIYKIIRELAAEGTAILLISSDLPEVLGMSDRVVVMHEGAPGATLE 485

Query: 479 ASEADQEKLMACAVG 493
            S    E +MA A G
Sbjct: 486 GSALTPETIMAHATG 500



 Score = 94.4 bits (233), Expect = 9e-24
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 16/224 (7%)

Query: 276 LKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISE 335
           +++G +  + G  GAG++ LMK++ G   +  G I L+G+   P +PQ+  + G+A + +
Sbjct: 32  VRRGRVHTLLGENGAGKSTLMKILAGVHGATSGEIVLDGQAYRPANPQEAASLGLAIVFQ 91

Query: 336 DRKGDGLVLGLSVKENMSLCALDQ----LSKGVQIRHADEVIAVDDFIRLFNIKTP-SRE 390
           +     L   L+V EN+      +    ++    +  A  ++A        +++ P    
Sbjct: 92  ELS---LCNNLTVAENILATREPRRFGFINDKALVAKAHRIVA--------DLRLPIDVT 140

Query: 391 QIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIIL 450
           + +GNLS   +Q V IAKGL    KV+ILDEPT  +     + ++++I + +  G +II 
Sbjct: 141 EKVGNLSIAQRQLVEIAKGLSHDAKVVILDEPTSSLSDSEAEILFEIIGRLRQRGAAIIY 200

Query: 451 VSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494
           +S  M E++ +SD I V+ +G         E   E L+A  VGR
Sbjct: 201 ISHRMEEIMRLSDDITVIRDGEYVSTHARDEVTIETLIALMVGR 244