Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  393 bits (1010), Expect = e-114
 Identities = 219/494 (44%), Positives = 311/494 (62%), Gaps = 3/494 (0%)

Query: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAG 60
           M+  +L +  I K++ GV AL   +L++  G++ AL G NGAGKST++ +L G    D G
Sbjct: 1   MSSPLLTMRGIRKSYAGVHALVDGNLDLERGQIHALCGGNGAGKSTILGILMGFTRPDCG 60

Query: 61  SIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMH 120
            I  +G+PVSF  P  +  AGI+I+ QEL+ +P LT+AENI+LG E     G + + +++
Sbjct: 61  EIRIEGKPVSFANPTQALQAGIAIVQQELSGVPHLTVAENIYLGAEPRRR-GFVDFPQLN 119

Query: 121 RKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSF-ESKVIIMDEPTDALTDTETE 179
           R+A++LLA L      +  L  LS+  QQ++EIAKALS  ++ ++I DEPT A+ + +T 
Sbjct: 120 RQAEELLASLGFDIDPRVPLASLSIASQQLIEIAKALSRRDADILIFDEPTSAIGEKDTL 179

Query: 180 SLFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMV 239
            LF V+ +L   G GI+Y++HRL E+F I D  TV +DG  I   RV D   + LIE M+
Sbjct: 180 RLFEVLRDLAAAGKGIIYVTHRLAEVFTIADSYTVFKDGARIETGRVADITREKLIESMI 239

Query: 240 GRKLEEQYPRIAAQQGDISLEVIGLTGSGVHD-VSFTLKKGEILGVSGLMGAGRTELMKV 298
           G  +E +Y +         L+V GL+ +   D VSFTL  GEILG+ GL+G+GR++L+  
Sbjct: 240 GGAIEGEYVKENVPSDRPLLDVRGLSRAPWFDRVSFTLHAGEILGIYGLVGSGRSQLLDT 299

Query: 299 IYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALD 358
           IYG  P++ G + + GR + P   +  L  GI+Y++EDRK  GLVL  SV +N+SL  L 
Sbjct: 300 IYGLYPADAGTVWVEGREIRPGRVRAALGAGISYVTEDRKHSGLVLCASVGDNLSLSQLP 359

Query: 359 QLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418
            + +   IR A E   +DD I    IKTP  EQI+ NLSGGNQQKV   +     PKVL+
Sbjct: 360 HIQRFGFIRTALERAGIDDSIAKMRIKTPGPEQIVRNLSGGNQQKVVFGRCTSIGPKVLL 419

Query: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFM 478
           LDEPTRGVDVGAKKEIY+ ++ F   G ++++VSSE+ E+ GMSDRI+V+ +G    EF 
Sbjct: 420 LDEPTRGVDVGAKKEIYRFVSDFTKAGGAVLMVSSELDEITGMSDRIIVIKKGAHVAEFP 479

Query: 479 ASEADQEKLMACAV 492
             E  Q+ LM  AV
Sbjct: 480 REETTQKALMMAAV 493



 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 18/235 (7%)

Query: 267 SGVH---DVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQ 323
           +GVH   D +  L++G+I  + G  GAG++ ++ ++ G    + G I + G+ V+  +P 
Sbjct: 16  AGVHALVDGNLDLERGQIHALCGGNGAGKSTILGILMGFTRPDCGEIRIEGKPVSFANPT 75

Query: 324 DGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQI----RHADEVIAVDDFI 379
             L  GIA + ++  G   V  L+V EN+ L A  +    V      R A+E++A   F 
Sbjct: 76  QALQAGIAIVQQELSG---VPHLTVAENIYLGAEPRRRGFVDFPQLNRQAEELLASLGFD 132

Query: 380 RLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPK-VLILDEPTRGVDVGAKKEIYQLI 438
              + + P     + +LS  +QQ + IAK L  +   +LI DEPT  +       +++++
Sbjct: 133 --IDPRVP-----LASLSIASQQLIEIAKALSRRDADILIFDEPTSAIGEKDTLRLFEVL 185

Query: 439 NQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVG 493
               A G  II V+  + EV  ++D   V  +G        ++  +EKL+   +G
Sbjct: 186 RDLAAAGKGIIYVTHRLAEVFTIADSYTVFKDGARIETGRVADITREKLIESMIG 240