Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., xylose ABC transporter ATP-binding protein from Rahnella sp. WP5

 Score =  419 bits (1076), Expect = e-121
 Identities = 226/496 (45%), Positives = 327/496 (65%), Gaps = 12/496 (2%)

Query: 8   LSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDA--GSIEYQ 65
           +  I K F  VKA+D  SL +  G V++L GENG+GKSTLMKVL GIY +    G I + 
Sbjct: 1   MRNITKRFGAVKAVDNISLTLSAGEVLSLCGENGSGKSTLMKVLCGIYPQGTFEGEIYFS 60

Query: 66  GQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKADQ 125
           G+ ++ KG RD++  GI+IIHQEL L+ QL++ EN+FLG E  S +G +  D+M+ +  +
Sbjct: 61  GERLTAKGIRDTEQKGIAIIHQELALVKQLSVLENMFLGNEWGS-YGLLDTDKMYLRCQR 119

Query: 126 LLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVI 185
           +LA++ +     TL+GEL LG++Q+VEIAKAL+ + +++++DEPT +LT++ET  L ++I
Sbjct: 120 MLAQVKLNIDPHTLVGELGLGQRQLVEIAKALNKQVRLLVLDEPTASLTESETAILLDII 179

Query: 186 NELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLEE 245
            +LR      +YISH+L E+  I D + V+RDG+ I  C    T+E  +I MMVGR+L E
Sbjct: 180 RDLRHHDIACIYISHKLNEVKAISDKLCVIRDGRHIATCNAAGTSEKEIIAMMVGRELTE 239

Query: 246 QYPRIAAQQGDISLEVIGLTG--------SGVHDVSFTLKKGEILGVSGLMGAGRTELMK 297
            +P    Q G   L V  LT           V +  FTL++GE+LGV+GL+GAGRTE+M+
Sbjct: 240 LFPPRERQIGKEILRVENLTAWHPVNRHIKRVDNAGFTLREGEVLGVAGLVGAGRTEMME 299

Query: 298 VIYGALPSE-RGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCA 356
            ++G  P    G I L G  V     +D +  G+A + EDRK DG+V  ++V  N++L A
Sbjct: 300 CLFGVYPGRWSGDIWLQGEKVQITGCRDAMRRGLAMVPEDRKRDGIVPVMAVGSNITLAA 359

Query: 357 LDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKV 416
           L Q S G  +R A+E  ++ + ++   IKT S E  IG LSGGNQQK  +A+ L+ KPK+
Sbjct: 360 LSQFSAGGVLREAEEQHSISESVKQLKIKTSSPELAIGRLSGGNQQKAILARCLLLKPKI 419

Query: 417 LILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGE 476
           LILDEPTRG+DVGAK EIY+LI Q  A+GM+II++SSE+PEVLG+SDR++VMH G++   
Sbjct: 420 LILDEPTRGIDVGAKHEIYKLIGQLAAQGMAIIVISSELPEVLGLSDRVVVMHLGQVKAC 479

Query: 477 FMASEADQEKLMACAV 492
              +   QE++M  A+
Sbjct: 480 LDNNNLSQEQVMEAAL 495



 Score = 85.9 bits (211), Expect = 3e-21
 Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 26/237 (10%)

Query: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSE--RGVINLNGRTVNPVSPQDGL 326
           V ++S TL  GE+L + G  G+G++ LMKV+ G  P     G I  +G  +     +D  
Sbjct: 14  VDNISLTLSAGEVLSLCGENGSGKSTLMKVLCGIYPQGTFEGEIYFSGERLTAKGIRDTE 73

Query: 327 ANGIAYISEDRKGDGLVLGLSVKENM---------SLCALDQLSKGVQIRHADEVIAVDD 377
             GIA I ++     LV  LSV ENM          L   D++    Q   A   + +D 
Sbjct: 74  QKGIAIIHQEL---ALVKQLSVLENMFLGNEWGSYGLLDTDKMYLRCQRMLAQVKLNIDP 130

Query: 378 FIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQL 437
                         ++G L  G +Q V IAK L  + ++L+LDEPT  +       +  +
Sbjct: 131 ------------HTLVGELGLGQRQLVEIAKALNKQVRLLVLDEPTASLTESETAILLDI 178

Query: 438 INQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494
           I   +   ++ I +S ++ EV  +SD++ V+ +GR      A+   +++++A  VGR
Sbjct: 179 IRDLRHHDIACIYISHKLNEVKAISDKLCVIRDGRHIATCNAAGTSEKEIIAMMVGR 235