Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ABC transporter from Klebsiella michiganensis M5al

 Score =  409 bits (1050), Expect = e-118
 Identities = 208/491 (42%), Positives = 318/491 (64%), Gaps = 2/491 (0%)

Query: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEY 64
           +L+L  I K FPGV+AL+   L+++PG+V AL+GENGAGKSTL+KV+TGIY  + G I Y
Sbjct: 7   LLSLKGITKVFPGVRALENVQLDLWPGKVTALIGENGAGKSTLVKVMTGIYQPEEGEILY 66

Query: 65  QGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREM-TSPFGRILWDEMHRKA 123
           +  P+    P  +   GI+ IHQE  L  +L++ ENIF+G+ + T    ++ W  MHRKA
Sbjct: 67  KAIPIQLPNPESAHKVGITAIHQETVLFDELSVTENIFVGQYLHTGLLKKLDWPAMHRKA 126

Query: 124 DQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFN 183
            ++L RL V+   +  L  LS+ ++ MV IA+ALSFE++V+I+DEPT AL+  E    + 
Sbjct: 127 SEILTRLEVQIDPRATLKTLSIAQRHMVAIARALSFEAQVVILDEPTAALSQHEILEFYQ 186

Query: 184 VINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKL 243
           ++  L++ G  I++ISH+  EIFE+ D  T+LRDG ++    + D  E+ ++ MMVGR +
Sbjct: 187 IVERLKQDGKAILFISHKFDEIFELADYYTILRDGVYVSSGAINDITEERMVAMMVGRAI 246

Query: 244 EEQYPRIAAQQGDISLEVIGLTG-SGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGA 302
            + YP++    G+  LEV  L   +    +SF+L+KGEILG  GL+GAGRTELM+ + G 
Sbjct: 247 TQTYPKVDCIPGETVLEVKDLCHPTEFAHISFSLRKGEILGFYGLVGAGRTELMQALSGV 306

Query: 303 LPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSK 362
                G I L G+ +    P D ++ GI  + E+R+  G ++ L + +N+SL  L +L+ 
Sbjct: 307 SHPSSGDIVLKGKPMRFRQPADAISAGIVCVPEERQKQGAIIALPIAQNISLPQLSKLNP 366

Query: 363 GVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEP 422
           G  +  A E    D++     +K  S  Q +  LSGGNQQKV I K L T P+V+ILDEP
Sbjct: 367 GGVLNDAREWRLADEYASRLQVKAFSWRQAVETLSGGNQQKVVIGKWLATHPEVIILDEP 426

Query: 423 TRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEA 482
           T+G+D+G+K  ++Q +++  ++G+++I+VSSE+PEV+GM+DRI+VMHEG +  E+ A EA
Sbjct: 427 TKGIDIGSKAAVHQFMSELVSQGLAVIMVSSELPEVMGMADRIIVMHEGLMVAEYRAGEA 486

Query: 483 DQEKLMACAVG 493
             E +++ A G
Sbjct: 487 TAETIVSAASG 497



 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 16/232 (6%)

Query: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLAN 328
           + +V   L  G++  + G  GAG++ L+KV+ G    E G I      +   +P+     
Sbjct: 23  LENVQLDLWPGKVTALIGENGAGKSTLVKVMTGIYQPEEGEILYKAIPIQLPNPESAHKV 82

Query: 329 GIAYISEDRKGDGLVLGLSVKENMSLCA------LDQLSKGVQIRHADEVIAVDDFIRLF 382
           GI  I ++     L   LSV EN+ +        L +L      R A E++         
Sbjct: 83  GITAIHQETV---LFDELSVTENIFVGQYLHTGLLKKLDWPAMHRKASEILT------RL 133

Query: 383 NIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFK 442
            ++   R  +   LS   +  VAIA+ L  + +V+ILDEPT  +      E YQ++ + K
Sbjct: 134 EVQIDPRATL-KTLSIAQRHMVAIARALSFEAQVVILDEPTAALSQHEILEFYQIVERLK 192

Query: 443 AEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494
            +G +I+ +S +  E+  ++D   ++ +G        ++  +E+++A  VGR
Sbjct: 193 QDGKAILFISHKFDEIFELADYYTILRDGVYVSSGAINDITEERMVAMMVGR 244