Pairwise Alignments

Query, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  421 bits (1082), Expect = e-122
 Identities = 219/494 (44%), Positives = 317/494 (64%), Gaps = 1/494 (0%)

Query: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAG 60
           ++QA LAL+ I K FPGVKAL   SL++YPG+V AL+GENGAGKST++K+LTGIY  D G
Sbjct: 16  VSQAALALAHITKTFPGVKALSDVSLSLYPGKVTALIGENGAGKSTVVKILTGIYQPDGG 75

Query: 61  SIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMH 120
            I   GQPV F  P+ +   G++ IHQE  L  +L++AENIFLG      FG I W +  
Sbjct: 76  RILVDGQPVPFSTPQAAADHGVTAIHQETVLFDELSVAENIFLGHAPRGAFGLIDWKKTT 135

Query: 121 RKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETES 180
             A  LL  +  +      L +L +  + +V IA+ALS E++V+IMDEPT AL+  E E 
Sbjct: 136 ENARALLTSIGAELDPDHKLKDLGIANKHLVAIARALSIEARVVIMDEPTAALSHKEIEE 195

Query: 181 LFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVG 240
           L+ ++  L+ QG  I++ISH+  EIF I D+ TV RDG+ IG+  + D  E  L++MMVG
Sbjct: 196 LYELVESLKAQGKAILFISHKFDEIFRIADNYTVFRDGQLIGDGAIADVTEADLVKMMVG 255

Query: 241 RKLEEQYPRIAAQQGDISLEVIGLT-GSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVI 299
           R + + +P+ A   GD  L V G    +   D+SFTL++GEILG  GL+GAGR+E M+ +
Sbjct: 256 RDVSQIFPQRAPNVGDTVLTVQGYAHPTEFDDISFTLREGEILGFYGLVGAGRSEFMQSL 315

Query: 300 YGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQ 359
           +G      G + + G      SP D + +GI Y+ EDR   G +L L + +N++L +L +
Sbjct: 316 FGITRPSAGSVEIGGARAEISSPADAVDHGIVYVPEDRGKQGAILDLPIFQNVTLPSLGR 375

Query: 360 LSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLIL 419
           +S+   +R A+E     ++    +++  S +  +GNLSGGNQQKV IAK L T+P+V+IL
Sbjct: 376 ISRKGFLRLAEEFALAREYTERLDLRAASLDTHVGNLSGGNQQKVVIAKWLATRPRVIIL 435

Query: 420 DEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMA 479
           DEPT+GVD+G+K  ++  + +  A+G+++I+VSSE+PEVLGMSDR++VM EGRI  E   
Sbjct: 436 DEPTKGVDIGSKAAVHDFMAELAAQGLAVIMVSSEIPEVLGMSDRVIVMREGRIVAELAG 495

Query: 480 SEADQEKLMACAVG 493
            +   E L+  A G
Sbjct: 496 DDLQPETLVRHAAG 509



 Score = 83.6 bits (205), Expect = 2e-20
 Identities = 68/258 (26%), Positives = 128/258 (49%), Gaps = 10/258 (3%)

Query: 241 RKLEEQYPRIAAQQGDISLEVIGLTGSGVH---DVSFTLKKGEILGVSGLMGAGRTELMK 297
           R L  + P ++  Q  ++L  I  T  GV    DVS +L  G++  + G  GAG++ ++K
Sbjct: 7   RPLPSEDPPVS--QAALALAHITKTFPGVKALSDVSLSLYPGKVTALIGENGAGKSTVVK 64

Query: 298 VIYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCAL 357
           ++ G    + G I ++G+ V   +PQ    +G+  I ++     L   LSV EN+ L   
Sbjct: 65  ILTGIYQPDGGRILVDGQPVPFSTPQAAADHGVTAIHQETV---LFDELSVAENIFLGHA 121

Query: 358 DQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVL 417
            + + G+         A      +     P  +  + +L   N+  VAIA+ L  + +V+
Sbjct: 122 PRGAFGLIDWKKTTENARALLTSIGAELDPDHK--LKDLGIANKHLVAIARALSIEARVV 179

Query: 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477
           I+DEPT  +     +E+Y+L+   KA+G +I+ +S +  E+  ++D   V  +G++ G+ 
Sbjct: 180 IMDEPTAALSHKEIEELYELVESLKAQGKAILFISHKFDEIFRIADNYTVFRDGQLIGDG 239

Query: 478 MASEADQEKLMACAVGRN 495
             ++  +  L+   VGR+
Sbjct: 240 AIADVTEADLVKMMVGRD 257