Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  296 bits (759), Expect = 2e-84
 Identities = 186/569 (32%), Positives = 288/569 (50%), Gaps = 45/569 (7%)

Query: 83  VRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDYAFA 142
           +RQL    T  R   Y L L P L  LSL SN+R+FQ  +  +I++ + +  G  D+   
Sbjct: 79  IRQLPADATAER---YQLLLRPWLWWLSLASNNRVFQNLATSDIVTTIFKAHGFTDFQLK 135

Query: 143 LKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSDSQPKLAKPV 202
           L      RE+CVQY ETDL F+ R+  EEG+ +   HE   HTL+  DS+D+   +    
Sbjct: 136 LTGSYTPREYCVQYSETDLAFVSRLLEEEGIFWFFTHEEGTHTLVLADSNDAFAPIPNGP 195

Query: 203 PYNALAG--GEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQGKDIAYQQPN 260
             N L    GE  L  +   Q    A     +  DY F  P       +Q + +A     
Sbjct: 196 TVNYLGQRIGERELHGIRSGQVCLQAVAGVYQATDYEFTTPTTSLY--SQAEAVAGPSSV 253

Query: 261 YEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFDLQDHLDHAMN 320
           YEH   PG Y   A G A ++ R++ LR        +SD   L+ G  F L  H D  +N
Sbjct: 254 YEH---PGGYTAKAQGDALTKQRVDGLRSQEQRFVGESDCRWLVPGYWFTLAGHEDTTLN 310

Query: 321 RDWLVVQANHQGTQPQALQEEGGSGATTYSNQLKLIPAHITWRA-RPCAKPQVDGPMIAT 379
            DW+V   +H+ +              +Y N+ + IP    +R  R   KP++     A 
Sbjct: 311 IDWVVTSVSHEASHD------------SYRNRFEAIPKATVYRPPRLTPKPRMY-TQTAL 357

Query: 380 VVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEV 439
           VVG  GEEI+ D +GR+K+ FPWDR   ++E SSCWVRV   W+G  +G   +PR+G EV
Sbjct: 358 VVGKAGEEIWTDEYGRIKLQFPWDRTGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEV 417

Query: 440 IVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTETHQ-GQGYNELSFEDQAGS 498
           IV+F++GDPD+P++TG  Y+  N  PYALP ++T++ ++T++ + G G+NEL FED+  +
Sbjct: 418 IVTFIDGDPDRPLVTGCVYNGDNALPYALPANQTQSGIKTQSSKGGGGFNELRFEDKKDA 477

Query: 499 EQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQ-RNQHLTVEGEVRS------ 551
           E++ L AQKD++  + +D T  + HD+ LTV N R   ++  ++ +T+E   RS      
Sbjct: 478 EEVFLQAQKDFNINVLNDTTATVGHDETLTVQNARTRTVKDGDETVTLEKGKRSVTIQTG 537

Query: 552 ------------KIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEAGAELTL 599
                        +  D +H  G + +HKV    ++     +++K    + +++G    +
Sbjct: 538 SDSLDVKDTRTVTVGSDQTHSTGGNYEHKVTGNYSLTVDGNLTIKVSGTLTLQSGGSFAI 597

Query: 600 KAGGSF-VKVDAGGVHLVGPAINLNAGGS 627
           K+G    V+         G A++  AG S
Sbjct: 598 KSGADLAVQASTSISQKAGTALSNQAGTS 626