Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  329 bits (843), Expect = 4e-94
 Identities = 204/627 (32%), Positives = 322/627 (51%), Gaps = 38/627 (6%)

Query: 42  FRYQVDLASALSNLTAEQFVDQTAHLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLT 101
           F Y++ L S  + +   Q + +   +++  DG   +  +GIV + S+     +   Y  T
Sbjct: 36  FNYELQLHSLDNAIDLNQLLGKPMCVSLQLDGGGERYFHGIVARCSQNVDQGQFASYQAT 95

Query: 102 LVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDYAFALKRECAQREFCVQYRETDL 161
           L P L  L+  S+ RIFQ  ++P+II  + +++G  D+  AL +   + E+CVQYRET  
Sbjct: 96  LRPWLWLLTRTSDCRIFQNLTIPQIIKQVFRDLGFSDFEDALSQTYREWEYCVQYRETSF 155

Query: 162 QFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSDSQPKLAK--PVPYNALAGGEINLPYVVD 219
            F+ R+  +EG+ Y   HE  +H L+  D+  +  K      VPY      +    ++ D
Sbjct: 156 DFVSRLMEQEGIYYFFRHEQGRHVLVLADAYGAHTKAPGYGSVPYYPKNEQQRERDHIHD 215

Query: 220 LQFKTTAQVSHTELKDYSFKKPAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAF 279
                  Q    EL DY F++P+     R       +   +Y  +D PG Y    +G+ +
Sbjct: 216 WHLAQEVQPGSLELNDYDFQRPSARIDVRA-AMPRPHAAGDYPLYDYPGTYVQSQDGEHY 274

Query: 280 SQIRLEYLRRDALLADAKSDEPLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQ 339
           ++ R+E L+      +   +   L +G  F L        NR++L+V A +  +Q    +
Sbjct: 275 ARTRIEALQTQHEQVELSGNARGLGSGHLFSLTGFSRQDQNREYLIVGARYYISQESG-E 333

Query: 340 EEGGSGATTYSNQLKLIPAHITWRARPCA-KPQVDGPMIATVVGPQGEEIYCDNFGRVKV 398
             GG+ +  + + L  I A  ++R  P   +P V GP  A VVGP+GEEI+ D FGRVKV
Sbjct: 334 TGGGAPSAQFESSLTCIDAQQSYRPLPITHRPIVKGPQTALVVGPKGEEIWTDQFGRVKV 393

Query: 399 HFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTY 458
           HF WDR+  SNE SSCW+RV+Q WAG  +GS+ IPR+G EVIVSFL GDPD+PI+TGR Y
Sbjct: 394 HFYWDRHDQSNENSSCWIRVSQAWAGKNWGSVQIPRIGQEVIVSFLEGDPDRPIVTGRVY 453

Query: 459 HATNTAPYALPDHKTKTVLRTETHQG---QGYNELSFEDQAGSEQILLHAQKDWDALIE- 514
           +A  T PYALP + T++  ++ + +G     +NE+  ED+ G+EQ+ +HA+++ D ++E 
Sbjct: 454 NAEQTVPYALPANATQSGTKSRSSKGGTPANFNEIRMEDKKGAEQLYIHAERNQDIVVEV 513

Query: 515 -------HDHTEVIRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQH 567
                  HD  + I H++ + +  DR   +QRN  L                 VG +   
Sbjct: 514 DESHSVGHDRNKSIGHNETVRIGQDRLRAVQRNDALL----------------VGGAKSD 557

Query: 568 KVGQRIAVEAGKEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLV--GPAINLNAG 625
            +  +  VEAG +I L  G K V+E  A   +   G+   + A G   +  G  ++LN+G
Sbjct: 558 SISTQYLVEAGSQIRLVCG-KSVLEFNASGEINISGTAFNIYASGNGNIDTGGRLDLNSG 616

Query: 626 GSA---GSGSAYGGQLAAAPRMLAQAK 649
           G++     G    G + AA +    AK
Sbjct: 617 GASEVDAKGKGIKGVIDAAVKAFFPAK 643