Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., VgrG-3 protein from Pseudomonas fluorescens FW300-N2E2

 Score =  322 bits (824), Expect = 7e-92
 Identities = 190/595 (31%), Positives = 315/595 (52%), Gaps = 15/595 (2%)

Query: 42  FRYQVDLASALSNLTAEQFVDQTAHLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLT 101
           F Y++ L S  + +   Q + +   +++  DG   +  +GIV + S+     +   Y  T
Sbjct: 36  FNYELQLHSLDNAIDLNQLLGKPMCVSLQLDGGGERYFHGIVARCSQNVDQGQFASYQAT 95

Query: 102 LVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDYAFALKRECAQREFCVQYRETDL 161
           L P L  L+  S+ RIFQ  ++P+II  + +++G  D+  AL R   + E+CVQYRET  
Sbjct: 96  LRPWLWLLTRTSDCRIFQNLTIPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSF 155

Query: 162 QFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSDSQPKLAK--PVPYNALAGGEINLPYVVD 219
            F+ R+  +EG+ Y   HE  +H L+  D+  +         VPY      +    ++ D
Sbjct: 156 DFVSRLMEQEGIYYFFRHEQGRHVLVLADAYGAHTTAPGYGSVPYYPKNEQQRERDHIHD 215

Query: 220 LQFKTTAQVSHTELKDYSFKKPAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAF 279
                  Q    EL DY F++P+     R+      +   +Y  +D PG Y    +G+ +
Sbjct: 216 WHLAQEVQPGSLELNDYDFQRPSARIDVRS-AMPRPHTAGDYPLYDYPGTYVQSTDGEHY 274

Query: 280 SQIRLEYLRRDALLADAKSDEPLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQ 339
           ++ R+E L+      +   +   L +G  F L        NR++L+V A +  +Q    +
Sbjct: 275 ARTRIEALQSLHEQVELAGNARGLGSGHLFSLTGFSRQDQNREYLIVGARYYISQESG-E 333

Query: 340 EEGGSGATTYSNQLKLIPAHITWRARPCA-KPQVDGPMIATVVGPQGEEIYCDNFGRVKV 398
             GG+    + + L  I A  ++R      +P V GP  A VVGP+GEEI+ D FGRVKV
Sbjct: 334 TGGGAPTAQFESSLTCIDAQQSYRPLATTHRPIVKGPQTALVVGPKGEEIWTDQFGRVKV 393

Query: 399 HFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTY 458
           HF WDR+  SNE SSCW+RV+Q WAG  +GSM IPR+G EVIVSFL GDPD+PIITGR Y
Sbjct: 394 HFYWDRHDQSNENSSCWIRVSQSWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVY 453

Query: 459 HATNTAPYALPDHKTKTVLRTETHQG---QGYNELSFEDQAGSEQILLHAQKDWDALIEH 515
           +A  T PY LP++ T++ +++ + +G     +NE+  ED+ G+EQ+ +HA+++ D ++E 
Sbjct: 454 NAEQTVPYDLPENATQSGMKSRSSKGGTPANFNEIRMEDKKGAEQLYIHAERNQDIVVEV 513

Query: 516 DHTEVIRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAV 575
           D +  + HD++ ++ ++    I  N+   V+ E    +    +  +  S   +VG+ + +
Sbjct: 514 DESHSVGHDRNKSIGHNETVTIGNNRLRIVKQEDILSVGQRKTDSISQSYVIEVGENLRL 573

Query: 576 EAGKEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGS 630
             G+ I   + +  +  +G +++  A G   + + GGV      ++LN GG  G+
Sbjct: 574 VCGESILELNASGQINLSGVQISFYASGD-AEFNTGGV------LHLNNGGGPGA 621