Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  341 bits (875), Expect = 9e-98
 Identities = 220/660 (33%), Positives = 350/660 (53%), Gaps = 30/660 (4%)

Query: 5   QFQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQT 64
           +F L +D    E L V  F+GQE++S           +R+ ++L S  S+L  E+ + + 
Sbjct: 9   RFTLTLDSGPSE-LKVLEFKGQEAISQP---------YRFDLELVSERSDLALEELLHRQ 58

Query: 65  AHLTIL-RDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSV 123
           A L    RD  V    +G V  +++GD+G R T Y ++LVP L  L  R N RIFQ+ +V
Sbjct: 59  AFLGFDDRDSGV----HGQVYSVAQGDSGKRLTRYQISLVPRLAYLRHRINQRIFQRLNV 114

Query: 124 PEIISILLQEMGI--EDYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEA 181
           P+I++ +L+E GI  +   F L  +  +RE+CVQY E+DL F+ RI AE G+ Y   H  
Sbjct: 115 PDIVARVLKEHGILADACQFTLGGQYPEREYCVQYGESDLAFIERICAEVGIHYHFRHRP 174

Query: 182 QKHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKP 241
             H L+F D     P+L +   Y   +G   + P +  L  +   + +   L+DY F++P
Sbjct: 175 CGHLLVFGDDQTVFPRLPESTLYLPDSGMATDEPAIKRLAVRLQTRTTAVTLRDYDFRRP 234

Query: 242 AYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEP 301
             G   +TQ  +   Q+P  E +  PG +    +GK  ++  LE    D  +A+  S+E 
Sbjct: 235 --GSLLQTQLDN--RQRPVLEDYHYPGGFCARDDGKHLTRRALERHGADHCVAEGGSNEN 290

Query: 302 LLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEE--GGSGATTYSNQLKLIPAH 359
            L++G    +++H     N  WL+ Q +H G QPQ L+E   G      Y N     P  
Sbjct: 291 ALVSGHFMRIKEHPREPWNDLWLLTQIDHHGRQPQVLEETAAGPDEFQGYKNTFLATPWD 350

Query: 360 ITWRAR-PCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRV 418
           + +R      KP+  G  +A V GP   EI+CD FGRVKV   WDR    +E SSCW+RV
Sbjct: 351 VFFRPPLHHEKPRAQGYQLAVVTGPVDSEIHCDEFGRVKVQLVWDRDGQRDEHSSCWLRV 410

Query: 419 AQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLR 478
           A  WA  +YG++ IPRVG EV+V F++GD D+P++ G   +  N  P  LP  KT++VLR
Sbjct: 411 ASGWAHDRYGAVMIPRVGMEVLVGFIDGDVDKPLVVGCLPNGANPVPLDLPADKTRSVLR 470

Query: 479 TETHQ-GQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRI 537
           +++   G GYNEL  ED+ G+E+I L AQ++W   + HD    + H++ + V       +
Sbjct: 471 SQSSPGGGGYNELRIEDRKGAEEIYLRAQRNWTQHVLHDQRVQVDHERSIVVAGTARHEL 530

Query: 538 QRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEAGAEL 597
           + ++     G+ R+++  D    V      +V  ++ + A ++  + +G ++V++ GA +
Sbjct: 531 KADEQRLTHGQRRAEVRHDDHLLVSGERHIRVTSQV-LNASQQFHVSAGQQVVLDGGASV 589

Query: 598 TLKAGGSFVKVDAGGVHLVGPAINLNAGGS-AGSGSAYGGQLAAAPRMLAQAKPVAELVQ 656
           TL+AGG ++ + AGG   +  ++ +  GG+     SA  G   +A + +A A P   L Q
Sbjct: 590 TLQAGGHWINIGAGG---ISSSVPIEVGGAPMAVMSAASGSPGSAEKRVAAAAPALSLAQ 646