Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  217 bits (552), Expect = 2e-60
 Identities = 152/466 (32%), Positives = 229/466 (49%), Gaps = 54/466 (11%)

Query: 6   FQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTA 65
           F L ++G E +  V+  F G+E++S           + + V+  S  S+L  +   D  A
Sbjct: 10  FSLTIEGFEHDFQVL-AFTGKEAISRP---------YLFNVEFVSERSDLDLKSLFDVEA 59

Query: 66  HLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPE 125
            LT    G     I+G V  ++    G   T Y L LVP L  L  R N RI+QQ SVP+
Sbjct: 60  FLTFDSKGN---GIHGRVYHIAHSSNGECLTRYRLALVPHLAYLRHRINQRIYQQFSVPK 116

Query: 126 IISILLQEMGI--EDYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQK 183
           I++++L+E GI  + Y F L     +R++C QY ETDL F+ R+  EEG+ +   H  Q 
Sbjct: 117 IVALILEEHGILGDAYRFHLGATYPERDYCTQYDETDLHFIQRLCEEEGIHFHFQHSTQG 176

Query: 184 HTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAY 243
           H L+F D     P + +P  Y   +    + P +  +  +     S    ++Y F+    
Sbjct: 177 HVLVFGDDQSVFPSIGQPTAYRHESDRVADEPLIKRINLRLGQLTSRISHRNYDFE---- 232

Query: 244 GFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYL-RRDALL--ADAKSDE 300
                        QQ + E  D+  RY    +GK   QIRL  + RR A    A+ +SD+
Sbjct: 233 -------------QQLDIEKDDSSQRYTGHEHGK---QIRLRTMERRHAAYRQAEGQSDQ 276

Query: 301 PLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATT--------YSNQ 352
             L++G   ++  H     N  WL+ Q  H+G QPQ L E    G T         Y N+
Sbjct: 277 TRLVSGHVLEISGHPRQEWNTLWLLTQVIHEGRQPQVLGENVARGNTLNEDDFHQGYRNR 336

Query: 353 LKLIPAHITWRARPCA--KPQVDGPMIATVVGPQGEEIYCDN-FGRVKVHFPWDRYSSSN 409
             ++P ++++R  P A  KPQV     A VV  +GE I  D  FG++KV FPWDR    +
Sbjct: 337 FVVLPWNVSYRP-PLAHKKPQVPSMQTAVVVASEGEGIQNDRCFGQIKVKFPWDREDRFD 395

Query: 410 EKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITG 455
           +KS CW++ A +W+      +  PR+G +V+V+FL  DPDQP++ G
Sbjct: 396 DKSHCWLKGATDWS----CEIGPPRMGMKVVVTFLENDPDQPVVGG 437