Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 741 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  318 bits (814), Expect = 1e-90
 Identities = 209/650 (32%), Positives = 323/650 (49%), Gaps = 42/650 (6%)

Query: 13  LEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTI-LR 71
           L  + L+++  EG E L            F Y++DL S    +T +Q + +   LT+ L 
Sbjct: 16  LGGDVLLLQSMEGSEELGRL---------FHYELDLTSEDRAITFDQLLGKPMGLTLELY 66

Query: 72  DGQVVQQINGIV---RQLSKGDTGH-RHTFYSLTLVPALERLSLRSNSRIFQQQSVPEII 127
           DG   +  +GIV   RQL    TGH +   Y ++L P    L+  S+ RIFQ ++VP+II
Sbjct: 67  DGGK-RYFHGIVCSCRQL----TGHGQFAGYRVSLRPWFWLLTRTSDCRIFQNKTVPDII 121

Query: 128 SILLQEMGIEDYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLL 187
             + +++G  D+  +L     + E+CVQYRET   F+ R+  +EG+ Y   H+  +H L+
Sbjct: 122 KQVFRDLGFSDFEDSLSGSYREWEYCVQYRETSFDFVSRLMEQEGIYYYFRHDKSRHVLV 181

Query: 188 FTDSSDSQPKLA--KPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGF 245
             D+  +    A  + VP+           +  D Q     Q     L DY F +P    
Sbjct: 182 LADAYGAHSTAADYESVPFYPPDRQMRERDHFYDWQLAREVQPGSLALNDYDFLRPRASL 241

Query: 246 TQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLA 305
             R+      +   +Y  +D PG Y    +G  +++ R+E +         +     +  
Sbjct: 242 EVRSSVPR-THTNADYPLYDYPGEYVQSNDGDHYARTRIEAIHSQFERVQLRGRARGIGC 300

Query: 306 GVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATTYSNQLKLIPAHITWRAR 365
           G  F L  +     NR++LVV A +Q  Q  A +      A  + ++L  + A+  +R  
Sbjct: 301 GHVFTLTGYDRADQNREYLVVAARYQIRQ-DAYESGQSDVAEQFVSELDCMDANQAFRPL 359

Query: 366 PCAK-PQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAG 424
           P    P V GP  A VVGP GEEI+ D +GRVKVHF WDR+  SNE SSCW+RV+Q WAG
Sbjct: 360 PLTPMPIVRGPQTAVVVGPSGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWIRVSQAWAG 419

Query: 425 SQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTETHQG 484
             +GS+ +PR+G EVIVSFL GDPD+PIITGR Y+A  T PY LP + T++ +++ + +G
Sbjct: 420 KNWGSVQLPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYGLPANATQSGVKSRSSKG 479

Query: 485 ---QGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDN--------DR 533
                +NE+  ED+ G+EQ+ +HA+K+ D  +E+D T  + HD+  T+DN        DR
Sbjct: 480 GSPANFNEIRMEDKKGAEQLFIHAEKNQDIEVENDETHWVGHDRRKTIDNDETVHVKHDR 539

Query: 534 FTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEA 593
              +  N+ +T+  +   K+  + +  +G +   KVG    +  G   +   G+   +  
Sbjct: 540 TETVDNNETITIGVDRTEKVGNNETISIGVNRTEKVGSDEKITIGANRTENVGSNETITI 599

Query: 594 GAELTLKAG-------GSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYGG 636
           GA+ T K G        S    D GG   +G + N N       G    G
Sbjct: 600 GADRTEKVGANEKISIASNRTEDVGGNETIGISGNRNETVQGNEGIEISG 649



 Score = 32.0 bits (71), Expect = 2e-04
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 516 DHTEVIRHDQHLTVDNDRFTR--------IQRNQHLTVEGEVRSKIALDSSHEVGASLQH 567
           D TE +  ++ +++ ++R           I  N++ TV+G    +I+ + S ++G +   
Sbjct: 602 DRTEKVGANEKISIASNRTEDVGGNETIGISGNRNETVQGNEGIEISGNQSTQIGQNESR 661

Query: 568 KVGQRIAVEAGKEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLV-GPAINLNAGG 626
            V Q       +  SL  G    + AG  ++L  G + + +   G  ++ G  I ++  G
Sbjct: 662 DVAQNRTTNIKQNDSLDVGKHFSLTAGDSISLTTGDASITMKKDGTIMISGKNITIDGSG 721

Query: 627 S 627
           +
Sbjct: 722 A 722