Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

 Score =  460 bits (1183), Expect = e-133
 Identities = 260/665 (39%), Positives = 381/665 (57%), Gaps = 27/665 (4%)

Query: 6   FQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTA 65
           F + ++G++ +  V+  F G+E++S           +R+ ++L S   +L  +  + + A
Sbjct: 10  FSMTLEGVDHDFQVLE-FRGREAISQP---------YRFDLELVSERPDLDLQALLHKPA 59

Query: 66  HLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPE 125
            LT    G     I+G+V ++++G++G R T Y LTLVP L  L+ R+N RIFQ  SVP+
Sbjct: 60  FLTFDPAGM---GIHGLVHRIAQGESGKRLTRYRLTLVPQLAYLAHRTNQRIFQHLSVPQ 116

Query: 126 IISILLQEMGIEDYAFALKRECA---QREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQ 182
           II+ +L+E GI+  A+  +        RE+CVQY E+DL F+ R+  EEG+ Y   H  +
Sbjct: 117 IIAQVLEEHGIQADAYRFQLGPVLYPPREYCVQYDESDLHFVQRLCEEEGIHYHFEHSTR 176

Query: 183 KHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPA 242
            H L+F D   S  +L +P  Y    G   + P +     +   + S    +DY F++P 
Sbjct: 177 GHVLVFGDGQTSFARLGQPTAYLQDNGMTADEPVIKRFAVRVATRTSRVGRRDYDFEQPR 236

Query: 243 YGF--TQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDE 300
                T R +    A  QP+ E +D PGR+ + A GK  SQ  LE  R D  LA+  SD+
Sbjct: 237 LLMEATHRGEPAANAMPQPDLEDYDYPGRFTERARGKHLSQRALERHRHDYRLAEGNSDQ 296

Query: 301 PLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATT-------YSNQL 353
           P L++G   ++ DH     N  WL+ +  H+G QPQ L+E   S   T       Y N  
Sbjct: 297 PRLVSGHLLEISDHPRREWNDLWLLTEVLHEGKQPQVLEESVTSHVETGDGFIQGYRNHF 356

Query: 354 KLIPAHITWR-ARPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKS 412
              P  I +R A    KP+V G   A V GP GEEI+CD +GRV+V F WDR   +++K+
Sbjct: 357 TATPWDIPFRPALRHPKPKVLGSQTAVVTGPAGEEIHCDEYGRVRVQFHWDREGQADDKT 416

Query: 413 SCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHK 472
           SCW+RV+  WAG +YG +AIPRVG EV+V+FL GDPDQP++TG  YH  +  PY LP +K
Sbjct: 417 SCWLRVSSSWAGDRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKEHQVPYDLPANK 476

Query: 473 TKTVLRT-ETHQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDN 531
           T+TV +T  +  G GYNEL  ED+ G EQI +HAQ+DWD  IEHD    + +++H TVD 
Sbjct: 477 TRTVFKTLSSPGGGGYNELRIEDRKGQEQIYIHAQRDWDENIEHDQKSRVGNERHDTVDA 536

Query: 532 DRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVV 591
           + ++  +  +H TV G+ + ++  D    +G +   K+G     +AG+EI LK+G K+V+
Sbjct: 537 NSYSEFRAEEHQTVAGDRKVEVKPDDHLTIGQTQHIKLGTAQLTKAGREIHLKAGQKMVI 596

Query: 592 EAGAELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYGGQLAAAPRMLAQAKPV 651
           EAG ELTLKAGGSF+K+D GG+ + GP   +NAGG+ G GS    +    P M  + K  
Sbjct: 597 EAGVELTLKAGGSFIKLDPGGITVSGPLARINAGGAPGKGSGIKIKPPVLPGMADRDKAG 656

Query: 652 AELVQ 656
           + L Q
Sbjct: 657 SLLEQ 661