Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

 Score =  464 bits (1194), Expect = e-135
 Identities = 272/685 (39%), Positives = 390/685 (56%), Gaps = 34/685 (4%)

Query: 6   FQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTA 65
           F L ++G+E +  V+   +G+E++S           +R+ ++L S  S+L  E  + + A
Sbjct: 10  FTLSLEGIEHDFKVLE-LQGREAISQP---------YRFDLELVSERSDLDLESLLHRPA 59

Query: 66  HLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPE 125
            L +   G     I+G+V Q ++G++G R T Y LTLVP L  L+ R N RIFQ  +VP+
Sbjct: 60  FLALAPVGS---GIHGLVHQAAQGESGQRLTRYRLTLVPQLAYLAHRINQRIFQHLTVPQ 116

Query: 126 IISILLQEMGIEDYAFALKRECA---QREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQ 182
           II+ +L+E GI+  A+  +        RE+CVQY ETDL F+ R+  EEG+ Y   H A 
Sbjct: 117 IIAQVLEEHGIQADAYRFQLGPVIYPAREYCVQYDETDLHFIQRLCEEEGIHYHFQHGAS 176

Query: 183 KHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPA 242
            H L+F D      +LA    Y   +G   + P +     +   + SH   +DY F+KP 
Sbjct: 177 GHVLVFGDDQTVFARLAATA-YQQDSGLVADQPVIKRFGLRLETRPSHVTRRDYDFEKPR 235

Query: 243 YGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPL 302
                          QP+ E +D PGR+ + A GK  SQ  LE  R D  LA+ +SD+P 
Sbjct: 236 LSMEAAFHSDF----QPDLEDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPQ 291

Query: 303 LLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATT-------YSNQLKL 355
           L +G    L +H     N+ WL+ +  H+G QPQ L+E   S + +       Y N    
Sbjct: 292 LASGHFLPLGEHPRSDWNQLWLLTEVLHEGKQPQVLEESVTSDSQSRDGFTQGYRNHFTA 351

Query: 356 IPAHITWR-ARPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSC 414
            P  I +R A    KP+V G   A V GP GEEI+CD +GRV+V F WDR   +++K+SC
Sbjct: 352 TPWDIPFRPALRHPKPKVLGSQTAVVTGPAGEEIHCDEYGRVRVQFHWDREGQADDKTSC 411

Query: 415 WVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTK 474
           W+RV+  WAG +YG +AIPRVG EV+V+FL GDPDQP++TG  YH  +  PY LP +KT+
Sbjct: 412 WLRVSSSWAGDRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKEHQVPYDLPANKTR 471

Query: 475 TVLRT-ETHQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDR 533
           TVL+T  +  G GYNEL  ED+ G EQI +HAQ+DWD  IEHD    + H++H TVD + 
Sbjct: 472 TVLKTLSSPGGGGYNELRIEDRKGQEQIYIHAQRDWDENIEHDQKVRVGHERHDTVDANS 531

Query: 534 FTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEA 593
           ++  +  +H T   + +++I  +    VG S Q K+G    VEAG+EI L SG K+V+EA
Sbjct: 532 YSEYRAEEHRTTHADRKTEIRANDHLTVGNSQQLKIGTGQFVEAGQEIHLSSGLKVVLEA 591

Query: 594 GAELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYG----GQLAAAPRMLAQAK 649
           G+ELT KAGGSF+K+DA G+ +VGP I +N+GGS G+GS       GQ+ AA   +    
Sbjct: 592 GSELTFKAGGSFIKLDASGITMVGPLIRMNSGGSPGNGSGAAPILPGQVKAADADVPGIS 651

Query: 650 PVAELVQPDIAASMQSGAARVIDVA 674
             A + Q  +  S ++G   V + A
Sbjct: 652 LEALVKQNMLFRSTRTGVCEVCEAA 676