Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 699 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

 Score =  448 bits (1152), Expect = e-130
 Identities = 256/639 (40%), Positives = 370/639 (57%), Gaps = 30/639 (4%)

Query: 6   FQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTA 65
           F L ++G+E +  V+  F+G+E++S           +R+ ++L S  S+L  E  + + A
Sbjct: 10  FTLSLEGVEHDFKVLE-FQGREAISQP---------YRFDLELVSERSDLDLESLLHRPA 59

Query: 66  HLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPE 125
            L +  DG     I+G+V Q ++G++G R T Y LTLVP L  L+ R+N RIFQ  +VP+
Sbjct: 60  FLALAPDGS---GIHGLVHQAAQGESGQRLTRYRLTLVPQLAYLAHRTNQRIFQHLTVPQ 116

Query: 126 IISILLQEMGIEDYAFALKRECA---QREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQ 182
           II+ +L+E GI+  A+  +        RE+CVQY E+DL F+ R+  EEG+ Y   H A 
Sbjct: 117 IIAQVLEEHGIQADAYRFQLGPVIYPPREYCVQYDESDLHFIQRLCEEEGIHYHFQHSAA 176

Query: 183 KHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPA 242
            H L+F D     P+LA    Y   +G   + P +     +   + S    +DY F+KP 
Sbjct: 177 GHALVFGDDQTVFPRLAATA-YQQDSGLVADQPVIKRFGLRLETRTSRVTRRDYDFEKPR 235

Query: 243 YGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPL 302
               + +   D    QP+ E +D PGR+ + A GK  SQ  LE  R D  LA+ +SD+P 
Sbjct: 236 LTM-EASFHSDF---QPDLEDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPR 291

Query: 303 LLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATT-------YSNQLKL 355
           L +G    L +H     N+ WL+ +  H+G QPQ L+E   S   T       Y N    
Sbjct: 292 LASGHFLPLGEHPRSDWNQLWLLTEVLHEGKQPQVLEESVTSHVDTGDGFIQGYRNHFIA 351

Query: 356 IPAHITWR-ARPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSC 414
            P  I +R A    KP+V G   A V GP GEEI+CD +GRV+V F WDR   +++K+SC
Sbjct: 352 TPWDIPFRPALKHPKPKVLGSQTAVVTGPVGEEIHCDEYGRVRVQFHWDREGQADDKTSC 411

Query: 415 WVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTK 474
           W+RV+  WAG +YG +AIPRVG EV+V+FL GDPDQP++TG  YH  +  PY LP +KT+
Sbjct: 412 WLRVSSSWAGGRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKDHQVPYDLPANKTR 471

Query: 475 TVLRT-ETHQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDR 533
           TV +T  +  G GYNEL  ED+ G+EQI LHAQ+DWD  IEHD    + H++H TV+ + 
Sbjct: 472 TVFKTLSSPGGGGYNELRIEDRKGAEQIYLHAQRDWDENIEHDQKIRVGHERHDTVEANS 531

Query: 534 FTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEA 593
           ++  +  +H T   + +++I  +    VG S   K+G    +EAG EI   +G+K+V++A
Sbjct: 532 YSEFKAEEHRTTHADRKTEIRANDHLTVGNSQHLKIGTGQFIEAGNEIHYYAGSKVVIDA 591

Query: 594 GAELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGSGS 632
           G ELT   GGSF+K+D  GV L G  I +N+GG+AG GS
Sbjct: 592 GMELTASGGGSFLKLDPSGVTLSGATIRMNSGGAAGKGS 630