Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

 Score =  253 bits (645), Expect = 4e-71
 Identities = 181/632 (28%), Positives = 298/632 (47%), Gaps = 57/632 (9%)

Query: 3   RLQFQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVD 62
           R  F+L +     + L++  F G E LS           F +Q+DL S  +++  +  + 
Sbjct: 12  RRLFKLTMALKGGQELLLDSFAGSEGLSAD---------FGFQLDLISDDASVKLKSAIG 62

Query: 63  QTAHLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQS 122
           Q+A + I       + ING V       +    + YS  +   L  ++ R +S+I+Q Q+
Sbjct: 63  QSATIEIELATGGSRYINGHVLSFGNNGSDGGMSRYSAYIGSWLSLIAQRYDSQIYQDQT 122

Query: 123 VPEII-SILLQEMGIEDYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEA 181
           V ++I  +L +  G+  Y F + R      +  QYRE+D  F+ R+  +EGL +   H A
Sbjct: 123 VEQVIRKVLGRYDGLAKYEFRVNRTLKPYSYITQYRESDSHFVMRLLEQEGLFFYFEHTA 182

Query: 182 QKHTLLFTDSSDSQPKLAKP--VPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFK 239
             HTL+  D S     L +   V ++  +  E +   +         Q     ++ + ++
Sbjct: 183 DSHTLIIMDDSTVLTPLPEQPQVRFHTASVTETS-DSITHWSSAREFQAGKISVQTFDYR 241

Query: 240 KPAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDA--NGKAFSQIRLEYLRRDALLADAK 297
           +P           +     P+YE FD  G+Y      +G+   + R+E L          
Sbjct: 242 QPGNRIPVTMNSLNQQGDVPSYEIFDYMGQYTHGTPEDGELLVRNRIEALELKGKTFVGS 301

Query: 298 SDEPLLLAGVRFDLQDHLDHAM----NRDWLVVQANHQGTQPQALQEEGGSGATTYSNQL 353
           S+   +  G  F+L  H +H      +R +L++   H+G+       + G     Y+N++
Sbjct: 302 SNCRAMRPGYTFELTQHYEHDTGSPDDRQFLLMNIEHRGSNNYTSGSQAG-----YANKI 356

Query: 354 KLIPAHITWRAR-PCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKS 412
             +   I +R +    KP + GP  A VVGP GEEIY D  GRVKV F WDRY   ++KS
Sbjct: 357 YCVRKKIKFRPQMDLLKPGISGPQTAIVVGPPGEEIYTDEMGRVKVQFHWDRYGKFDDKS 416

Query: 413 SCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHK 472
           SCWVRVAQ  A   +GSM IPRVG EV+V FL+G+PD+P++ G  Y++ NT P++LP +K
Sbjct: 417 SCWVRVAQSGASGGFGSMQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANK 476

Query: 473 TKTVLRTETHQGQG--YNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVD 530
           T++   T + +G G   N   FED+AG+EQ+++HA+++ D  IE D    + +++ +TV 
Sbjct: 477 TQSGFLTRSAKGDGGTANFFRFEDKAGAEQVIMHAERNMDTEIELDEKHEVGNNRKVTVG 536

Query: 531 NDRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIV 590
                 IQ++   TV    +    L   ++                            I 
Sbjct: 537 GTNTEIIQKD---TVTNVQQGSFTLKVDNQF---------------------------IQ 566

Query: 591 VEAGAELTLKAGGSFVKVDAGGVHLVGPAINL 622
           V+A   + LK G S + +   G+ + G  IN+
Sbjct: 567 VDAKQYILLKVGDSSISITPEGIQIKGKVINV 598