Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 958 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

 Score =  160 bits (404), Expect = 5e-43
 Identities = 131/503 (26%), Positives = 217/503 (43%), Gaps = 53/503 (10%)

Query: 43  RYQVDLASALSNLTAEQFVDQTAHLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTL 102
           RY VD+ +  ++   E+ + Q   L+I  D   +   +G V  +    +      + L  
Sbjct: 49  RYTVDVINQTTDFDPEKLIGQAVQLSIRLDDGSLSPRHGWVESVRYLGSDGGLEDWQLVF 108

Query: 103 VPALERLSLRSNSRIFQQQSVPEIISILLQE--MGIEDYAFALKRECAQREFCVQYRETD 160
            P    L  R + RI+Q+ S+P+I++ + Q       +Y F L+R+     +  Q+ ETD
Sbjct: 109 APWFSLLEYRIDCRIWQEMSLPDILAQVFQHYSQARANYRFDLQRDYPLLSYVTQFNETD 168

Query: 161 LQFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDL 220
             F+ R   +EGL +   H+   H ++FTD+ DS P L         A    +     DL
Sbjct: 169 ANFVQRWCEQEGLFWYVEHKVDSHCIVFTDNIDSLPTLNP-------ASLRFHTQQAADL 221

Query: 221 QFKTTAQVSHTEL-------KDYSFKKPAYGFTQRTQGKDIAYQQPNYEHFDAPGRY--K 271
           +   T       L       +   ++  A      +     A   P+ E +   G+Y  +
Sbjct: 222 KDSITQWSPGARLLNGLVQWRSSEYRSHAQPQITHSMALPAASAPPDLERYQYRGQYAWQ 281

Query: 272 DDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFDLQDH----LDHAMNRDWLV-- 325
           +   G+  +++++E     A     +     +  G  F+L  H    L    +R +L+  
Sbjct: 282 NLGRGEWLARVQIEQDESAARRIQGQGGARQMQPGHGFELTQHPLYELKPLQDRQFLIVA 341

Query: 326 ----VQAN------------HQGTQPQALQEEGGSGATT---YSNQLKLIPAHITWR-AR 365
               VQ+N               TQ  ALQ +    A     Y N+ +     I +R A 
Sbjct: 342 VEFFVQSNLPIGKTRSSPPGSLKTQLDALQTQASLPAGDEGFYLNRFETQRLDIPYRSAF 401

Query: 366 PCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGS 425
              KP   GP  A VV P G E++ DN  RV V F WDR     E  SCW+R+ Q  +G 
Sbjct: 402 THQKPAHPGPQTAVVVTPGGHEVFTDNLNRVCVRFHWDRLVKDGELGSCWLRMMQSSSGQ 461

Query: 426 QYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYA---LPDHKTKTVLRTETH 482
            +GS+ +PR G EV+V+FL+ D D+P+I G+ Y     A ++   +  +K++ +      
Sbjct: 462 DWGSVNVPRAGEEVVVTFLDNDIDRPLIMGQVYGGHKPAWHSSGLMSGYKSQEI------ 515

Query: 483 QGQGYNELSFEDQAGSEQILLHA 505
           QG GYN+   +D  G  +  +H+
Sbjct: 516 QGSGYNQWVMDDSTGQVRTQIHS 538