Pairwise Alignments

Query, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

 Score =  215 bits (547), Expect = 1e-59
 Identities = 148/499 (29%), Positives = 237/499 (47%), Gaps = 29/499 (5%)

Query: 14  EDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTILRDG 73
           +++ L++  F G ESLS+          F +++ + S  + L  +  + Q A L I    
Sbjct: 25  DEQELLLESFSGTESLSEL---------FSFELSMISRDAGLELKSQIGQPAQLAIELAT 75

Query: 74  QVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQE 133
              + ING +   S   +      YS TL P L  LS R +SRIFQ+Q++  +I  +   
Sbjct: 76  GESRYINGYISAFSLEGSDGGLARYSATLSPWLWMLSRRVDSRIFQEQTIEAVIRTVFAA 135

Query: 134 MG-IEDYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDSS 192
            G + D+ F L +      +  QYRE+DL F+ R+   EGL +   H  +KHTL+  D S
Sbjct: 136 YGALPDFEFQLSQPLKTHSYITQYRESDLTFVLRLLEHEGLFFYFDHNQEKHTLIILDHS 195

Query: 193 -DSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQG 251
            D  P   +P      A        + + +     Q     ++ + +K+P          
Sbjct: 196 RDLSPLPQQPTIRYHSASVTETADSITEWRSHRRLQSGRMSIQTFDYKQPRNSLPVGMPS 255

Query: 252 KDIAYQQPNYEHFDAPGRYKDDA--NGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRF 309
            +      +YE +D    Y      +G+   + RLE +          S+   +  G  F
Sbjct: 256 LNEQGNVDSYEVYDVLDHYSHGTFKDGERLVRQRLEAIEVQGKTFTGNSNCRAMYPGHTF 315

Query: 310 DLQDHLDH----AMNRDWLVVQANHQGTQPQALQEEGGSGATTYSNQLKLIPAHITWRAR 365
           +L  H DH    A +R +L++   H+G+    L +EG      Y+N+   I   I +R  
Sbjct: 316 ELTQHFDHDRGSAEDRSFLLITVKHEGSN-NYLSDEGAG----YTNEFVCIRHKIPYRHP 370

Query: 366 -PCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAG 424
               +P ++GP+ A VVGP GEE++ D   R++V F W R   S  + + W+RVA   AG
Sbjct: 371 ITVPRPSINGPLSAIVVGPDGEEVFTDELARIQVRFHWQR-GDSLPQGTTWLRVAMPSAG 429

Query: 425 SQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAP-----YALPDHKTKTVLRT 479
           S +G   +PR+G EV+V+FL GD D+P++T   Y+  N  P       LP ++T + +RT
Sbjct: 430 SGFGHQFMPRIGQEVLVTFLAGDIDRPLVTSVLYNNINLPPRFSKASGLPGNRTLSGIRT 489

Query: 480 ETHQGQGYNELSFEDQAGS 498
           + H+G G+NEL F+D  GS
Sbjct: 490 QEHKGSGFNELLFDDTPGS 508