Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1274 a.a., IcmF-related protein from Pseudomonas fluorescens FW300-N2E2

 Score = 59.3 bits (142), Expect = 2e-12
 Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 66/364 (18%)

Query: 126 YALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDE--SVLID 183
           Y +PW ++LG E  G               +  R   Q ++    F  W  D   SVL+ 
Sbjct: 55  YQMPWLMMLGNETDGAQ-----------LCAQWRL--QPTDKAAWFGRWFSDAEGSVLVV 101

Query: 184 PDGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLAL------DVAHLAT 237
           P    L     + +      R  W   +  + R RS+RPL+ ++  +      D+ H   
Sbjct: 102 PQALFLPDEGMNRQ------RGNWWRLLGLMLRLRSKRPLDAVIWTVPFSTLDDIEHTTE 155

Query: 238 ATASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLG 297
            +   R+ + +LL        +     LPVY+ +  ++ L G +          RE +LG
Sbjct: 156 LSLKVRRCFIDLL--------QRFGLSLPVYVVICGMEELPGVQELVSALPAEARESMLG 207

Query: 298 FT--FSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEER--NAIYSFTRQI 353
           ++  +  D+     +W  +++    Q + +VN  L  ++     L  +  + +Y    + 
Sbjct: 208 WSSPYLPDA-----AWQSQWSD---QALDQVNAALSQSIIEIGALSGQLGSDLYGLPERF 259

Query: 354 SGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINT 413
            GL+  LQ   +     +    +   RG YFT+     V                  +  
Sbjct: 260 EGLRRALQILLEPVFQGNAQGEAPRCRGVYFTASQAPAVS--------------GDGLTA 305

Query: 414 AQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGL-SFVACSVATLLLAG-- 470
           A+  +  TV F ++L++  +  E GLA    R+ + ++R   L + VA  V  + L G  
Sbjct: 306 AESVQRQTV-FARQLWSRRLVAERGLAQPVPRLLRLRQRGHRLVAAVALVVGLVWLGGMV 364

Query: 471 -TWH 473
             WH
Sbjct: 365 WVWH 368



 Score = 37.4 bits (85), Expect = 8e-06
 Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 37/194 (19%)

Query: 959  DVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMFIDENISVAS- 1017
            DV   F   LAGR+PF    ++DV  +D           D    Q L   ID  + +A  
Sbjct: 1011 DVANYFNQYLAGRFPF----SQDVRASD----------ADPARVQHLLELIDTRLPLAQA 1056

Query: 1018 ----DDSAQSIIRKEVLDQIKQAQKIREAFF--NRKGILDVSFSVEPLSLSNNKRRS--- 1068
                  + + +  ++ L+++KQA       F  ++ GIL V   V   +  + +R +   
Sbjct: 1057 GLTLSQTPERLAAEDFLNRLKQAGTWLGPLFVRDKSGILGVEMDVRWRTDRDEERGADQV 1116

Query: 1069 ---VLNVDGQFLAYSHGPRENVELIWPNTLR------DSAVSKVTLIPTQTNMSPRSL-- 1117
                L+   Q ++Y  G ++N+  +    +R       +   +    P Q N+  R L  
Sbjct: 1117 IAWSLDAGNQQISYPGGGQQNLRWMVGQPVRLTLRWARNGYQRPANDPLQPNLVVRDLEA 1176

Query: 1118 --QIQGPWAFFRLL 1129
              + QGPW+  RL+
Sbjct: 1177 GWEYQGPWSLLRLM 1190