Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1166 a.a., IcmF-related protein from Pseudomonas fluorescens FW300-N2E2

 Score =  392 bits (1007), Expect = e-113
 Identities = 326/1199 (27%), Positives = 538/1199 (44%), Gaps = 98/1199 (8%)

Query: 29   ILLNVAIWWAGP---WLEVAGYKPLESIMARVVASSLFTLGCLAVWGIWQWRKLQAFKSE 85
            I L++ IW+ GP   WL   G +    I+   V  +        V+ I Q R+ QA +  
Sbjct: 19   IALSLIIWFVGPLLDWLVPEGRRWALIILVFAVWIAY------RVFRIIQARR-QAAEVM 71

Query: 86   QKREEQLRQDPIKVYEQRQEVELNQVMLNMKQSLNK-------HNYLYALPWYLVLGLEN 138
            +    Q   DP  +    +   L Q M      L K          LY LPWY+++G   
Sbjct: 72   RSLAAQTPPDPTSIATAEELETLRQRMDEALALLKKAKLGGDERRNLYELPWYVIIGPPG 131

Query: 139  AGKTSLINRSGQNFVFSSVMRASGQKSEN-PYSFDWWIGDESVLIDPDGELLTQGNRSEE 197
            +GKT+ +  SG +F  ++ + A   +      + DWW  D++VL+D  G   TQ     +
Sbjct: 132  SGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAGRYTTQ-----D 186

Query: 198  NDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLLRARLREL 257
            +D  +++  WL F+  L + R+RRP++G  +A+ ++ L   + +ER A+A  +R R++EL
Sbjct: 187  SDATIDKAAWLGFLGLLKKQRARRPIDGAFIAISLSDLLLGSDAERAAHAAAIRLRIQEL 246

Query: 258  METLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSWLEEFAS 317
               L  R P+Y+ LTKLDL+ GF  +F   +K +R +V G TF++D   + DS L    S
Sbjct: 247  YTQLGVRFPIYLMLTKLDLVPGFMEYFDTLSKEERAQVWGMTFALDDGKSSDSPLAHLQS 306

Query: 318  EYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQEALASDQFSTSA 377
            E+T    R+N  L   +        R+ IY F +Q   LK+ LQ F +     + F    
Sbjct: 307  EFTGLEQRLNDRLVERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPNAFEERV 366

Query: 378  LVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVYFTQKLFTHIIYPEA 437
            L+RG YFTS  Q+G P +    + ++   L    + A++      YF +KLFT + + E 
Sbjct: 367  LLRGVYFTSGTQEGSPIDRLIGSMAQSMNLDRQ-HLARQTGTGRSYFIEKLFTAVAFAER 425

Query: 438  GLASDNFRVAKNKRRLMGLSFVACSVATLLLAGT-WHRNYLNNVQHADTVLTKVNQYKEQ 496
            GL   + +V + +R+ +    +A +V  +L+  T W  +Y  N  +   V  KV    + 
Sbjct: 426  GLVGVDPKV-ERRRKWIARGVLASTVVLVLVVSTLWWVSYRANQAYIAQVDQKVAPLGQ- 483

Query: 497  FPTSRSLA-SQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPKVEETYLNL 555
              T ++L+ +QR+VL  L  +           D P +    GLYQG  +  +    Y  L
Sbjct: 484  --TVQNLSPAQRDVLAVLPLLNAVK---HLADDAPSWAEGLGLYQGDMLEAESGSVYRKL 538

Query: 556  LETRFLPLLMADTIVALNQAETDEEKLAVLRVYRMLVDKSGRYQDYVMDYFAKYWQKSFS 615
            L   F P L+      L+     +     L+ Y ML D      D++  + A  W +S  
Sbjct: 539  LIAVFAPRLLTRIEEQLHSGGNSDFLYEGLKAYLMLADTEHYDADFIKAWIALDWDRSL- 597

Query: 616  GQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDKVIARAQVELGSMPNDQRV 675
              R +  E         +   LTA      +    + R   +++   + +L  +P  QRV
Sbjct: 598  -PRDLPAE---------QRQALTAHLQALFERRPPLARLDQRLVEDLRRQLQQLPVAQRV 647

Query: 676  YRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMPQSE 735
            Y  +K        P   +    G    +VF  +        +    T +G+   F+  S 
Sbjct: 648  YDRIKRQKLPDGIPDFRINEAAGRDAALVFSRKSGKPLGEPLSGFFTVKGYRQGFLLTSL 707

Query: 736  SVSELALIDSWVLGQSKTAQFSEADKQ---ALREKIRDLYVADYTNTWRAALNEIDVKYF 792
            S +     + WVLG      F +AD+Q   +L   +R LY  DY   W A L +ID    
Sbjct: 708  SQTGTLAEEQWVLG------FEQADQQNVASLAADVRRLYFQDYLRQWDALLADIDFVPI 761

Query: 793  NDINDAVMVLENITSNLEPMQRLLRTLDDNTQLY----------SALPKDESALKELLKS 842
              +  A  VL  I+    P+++LL  +   T L           + +      LKE L S
Sbjct: 762  TSVAQAADVLRVISGPTSPLKKLLVAVAKETDLQQDERLLAAQGAPVEGGVDKLKERLGS 821

Query: 843  PKYKVASMIETP----------FADLNGMLKPVGSKPAYMTEVLASVDELKSYLKSIQDA 892
               +  S    P          FA+LN ++     +PA +  +LA ++ L   + ++  A
Sbjct: 822  LLGQEQSTQNAPAQSDDPITAHFAELNSIVSKSEGEPAAIDGLLADMNALYVQVSAMVGA 881

Query: 893  PD---VGMAALDATKARVKL-VNAD--PIYTLKRISSGLPKPLDSMMAKLADESWYVVKQ 946
                 +G A   AT A  ++ +NA+  P      + S +    +SMM  + ++       
Sbjct: 882  SGDALLGEAKNQATAAATRVSLNAERQPPLVQGLVKSVVNSTTNSMMGGVRNQ------- 934

Query: 947  EAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQLK 1006
                 L   WT +V   ++  LAGRYP +P S +D  L DF  FF   G +DN++ + L+
Sbjct: 935  -----LNAAWTSEVVNIYRQSLAGRYPMSPGSARDATLDDFGQFFGVGGVMDNYFRKYLQ 989

Query: 1007 MFIDENISV--ASDDSAQSI-IRKEVLDQIKQAQKIREAFFNRKGILD-VSFSVEPLSLS 1062
             ++D +         +AQ + I   VL   ++A  IR+AFF   G    V F ++P+++ 
Sbjct: 990  PYVDTSTPTWRWQPGAAQKLGIAPGVLQTFQRAATIRDAFFRSGGTQPMVRFELKPVAMD 1049

Query: 1063 NNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQGP 1122
            +   + +L++DGQ L+Y HGP     + WPN      V +++++P  ++     + + GP
Sbjct: 1050 STITQFLLDLDGQQLSYDHGPSRPTAMQWPNP-GSIGVVRISIMPPSSS-GRSGITLDGP 1107

Query: 1123 WAFFRLLDQGDVVSA-SQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSFKLSKTL 1180
            WA+FRLL+Q D+ +  S    + +  VDG    Y + A +  NPF  R+   F L + L
Sbjct: 1108 WAWFRLLEQSDLTAGNSPDRFNLRLRVDGASASYELRANSAFNPFKSRVLSGFSLPERL 1166