Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1147 a.a., IcmF-related protein from Pseudomonas fluorescens FW300-N2E2

 Score =  329 bits (844), Expect = 7e-94
 Identities = 308/1200 (25%), Positives = 517/1200 (43%), Gaps = 120/1200 (10%)

Query: 24   LFTTFILLNVA--IWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLAVWGIWQWRKLQA 81
            ++T   +L +A  +W+AGP L V  YK   S  AR++  S+  LG          R   +
Sbjct: 17   IWTLLAVLCIALLVWFAGPLLAVNDYKFWASPTARLLTVSVLLLGWGLAMVFVSGRGGSS 76

Query: 82   FKSEQKREEQLRQDPIKVYEQRQEVELNQVMLNMKQSLN--KHNYLYA---------LPW 130
               +Q   EQ R     ++  R E E  +V    KQ+L+  + + LY          LPW
Sbjct: 77   TNLQQNAPEQARA----LHLARIEDEQREVRSRFKQALSTLRSSSLYPGRSERWRNDLPW 132

Query: 131  YLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDPDGELLT 190
            YL++G   +GKT L++RSG  F  + + R     +      DW+  + +VL+D  G  LT
Sbjct: 133  YLMIGPPASGKTRLLDRSGLEFPLNKLERKPIGDTSGTRYCDWYFAEHAVLVDTAGRYLT 192

Query: 191  QGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLL 250
            Q       D  ++  +W   ++ L + R  RPLNG+++ +    L   +  E    A  +
Sbjct: 193  Q------TDSDVDSSVWAVLLELLRKRRRSRPLNGVLVTVPTEVLLLGSEDEVTTLARQI 246

Query: 251  RARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDS 310
            R RL+EL + L   +PVY+ L+K D + GF  FF   T+ + ++VLG +FS    D    
Sbjct: 247  RGRLQELQQRLHVDVPVYLVLSKADNVPGFNEFFDSLTREENDQVLGASFSR---DQRGC 303

Query: 311  WLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQEALAS 370
             +    +E+   + R+N  +   +        R+ +  F  Q+  L   L    ++A   
Sbjct: 304  DVAVLRAEFEALLHRLNSQVIMRMHQERDPLRRSCMLDFPHQLGQLGTSLCLLVEQAFT- 362

Query: 371  DQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVYFTQKLFT 430
                +   +RG Y TS    G  TN      SR                    F + L +
Sbjct: 363  ---GSVGTLRGFYLTSASSSG-RTNTAPGGRSR--------------------FIKHLIS 398

Query: 431  HIIYPEAGLASDNFRVAKNKRRL-MGLSFVACSVATLL-LAG-TWHRNYLNNVQHADTVL 487
             +I+PEA L      V + +RRL  G   +     T++ L G  W   +  N +  D++ 
Sbjct: 399  RVIFPEADLTD---LVQRERRRLHWGQRVMYFGALTVIGLCGLLWAHGFSANHERLDSLR 455

Query: 488  TKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPK 547
            T   ++ +Q     +      +L+ L+   EAT  F  +R  P +    GLYQG    P 
Sbjct: 456  TLTQRWDQQQSVQANADDWTSMLESLDIRFEATQVFPPYRAVPLH-ERVGLYQGEASNPA 514

Query: 548  VEETYLNLLETRFLPLLMADTIVALNQAETDEEKLA-VLRVYRMLVDKSGRYQDYVMDYF 606
            V   Y   L+ R LP +       +     D E+L   LR Y ML  +  R   ++ D+ 
Sbjct: 515  VTNAYERDLQGRLLPKVAQRLEAHVRNNWNDREQLLNSLRAYLMLGLQERRDVAWLKDWL 574

Query: 607  AKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDKVIARAQVEL 666
            A      + G   +QE L  HL+  +    + A  LN            + ++A+A+  L
Sbjct: 575  ANDGSLRYPGNTALQEGLNAHLERLLELPFIHA--LN------------EPLVAQAREAL 620

Query: 667  GSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGF 726
                    VYR L   A  +  P   L   +G       +  +L  +   IP   T++G+
Sbjct: 621  RRESLATVVYRMLHEQASHL--PQYRLSQHLGS------QGALLVGTDRVIPGFYTRQGY 672

Query: 727  DDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALNE 786
            + YF  Q  ++    L D+WVLG+ +    S  D + L  ++  LY  DY + W  A+ +
Sbjct: 673  ERYFSVQGAALVTELLRDNWVLGEGE--GLSRMDMRRLMVELEQLYFRDYADHWSEAVGQ 730

Query: 787  IDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNTQLYSALPKDES----------AL 836
            + ++  ++  +    L  +TS   P+ R+L  + D+T++ +   + +           A+
Sbjct: 731  VALQTISNAGEGAEQLAGLTSAHSPILRMLVQVRDHTRIQAVAEQIDDLTRAAGNAGHAV 790

Query: 837  KELLKSPKYKVASMIET-----------PFADLNGMLKPVGSKPAYMTEVLASVDELKSY 885
             +L        AS+ E             F  L+ +L P     A + + L +VDE++  
Sbjct: 791  TKLSAVAGKASASLAENLPDTAQKSLRRRFEPLHRLLDPDNGPTADLVQALRAVDEVQLQ 850

Query: 886  LKSIQDAPDVGMAALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLADESWYVVK 945
            L ++  A     AA +  + R+     D +  L+  S+ LP+PL +    +A++SW +V 
Sbjct: 851  LANLARASAPEQAAFELARHRMG-GQRDALSHLRGASARLPRPLSAWFNVMAEDSWRLVL 909

Query: 946  QEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQL 1005
             ++ ++L  R+  ++Y  +   +  RYPF+  S  DVAL DF  FF   G +D F++  L
Sbjct: 910  NDSYRYLNQRYQSELYSFYGKAINKRYPFSAHSASDVALNDFREFFKDQGIVDRFFDNYL 969

Query: 1006 KMFIDENIS---VASDDSAQSIIRKEVLDQIKQAQKIREAFFNRKGI-LDVSFSVEPLSL 1061
            + FI  +     + S +     + +  LDQ+  A  IR +FF        V F +EP +L
Sbjct: 970  QPFISGSAGHYRLRSIEGQSLPMSRVYLDQMATAHTIRRSFFAENPTEPQVQFKLEPYTL 1029

Query: 1062 SNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQ- 1120
                 R+      Q L Y HGP   V   WP+  ++   + V        M  R + I+ 
Sbjct: 1030 DPAVSRAEFRFGDQMLEYRHGPILPVAFTWPSDAQNGRTALVL-----DKMVGRGVGIEK 1084

Query: 1121 --GPWAFFRLLD--QGDVVSASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSFKL 1176
              GPW+ FRL D  Q + ++     V  K  + G    Y + ++   NPF   + ++F+L
Sbjct: 1085 NTGPWSLFRLFDLMQSEYLTGRDVRV-LKADLGGLRANYLLTSQRTPNPFDMSVLRTFRL 1143