Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1179 a.a., type VI secretion protein IcmF from Pseudomonas stutzeri RCH2

 Score =  377 bits (967), Expect = e-108
 Identities = 322/1200 (26%), Positives = 524/1200 (43%), Gaps = 92/1200 (7%)

Query: 29   ILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLAVWGIWQWRKLQAFK---SE 85
            +LL V +W+ GP L V  Y+  E+  AR+++ S+  LG         WR     K    +
Sbjct: 24   LLLAVVVWFVGPLLAVDDYRFWEASTARLLSISVLFLGWGLAMVFTSWRASARRKRDAED 83

Query: 86   QKREEQLRQDPIKVYEQRQEVE--LNQVMLNMKQSL----NKHNYLYALPWYLVLGLENA 139
            Q  +EQLR+D + + E++QE+     Q +  +K S         +   LPWYL++G + +
Sbjct: 84   QDVQEQLRRDGL-IGEEQQELRHRFKQALRTLKTSSLYRGRSEKWRSELPWYLLIGPQGS 142

Query: 140  GKTSLINRSGQNFVF--SSVMRASGQKSENPYSFDWWIGDESVLIDPDGELLTQGNRSEE 197
            GKTSL++ SG +F    S   R +   S   Y+ DW+  D +VLID  G  LTQ      
Sbjct: 143  GKTSLLDFSGLDFPLNRSEQQRLTKDVSGTRYA-DWYFADHAVLIDTAGRYLTQP----- 196

Query: 198  NDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLLRARLREL 257
             D A++  +W   +  L R R  RPLNG+++ L V  L   +  E +  A   R RL E+
Sbjct: 197  -DAAVDGSVWDTLLGLL-RKRRARPLNGVLVNLPVDQLQGGSELELENLARQTRQRLHEI 254

Query: 258  METLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSWLEEFAS 317
             + L+  +PVY+ L+K D + GF+ FF+  ++ + ++VLG +F     +   S  +    
Sbjct: 255  HQRLNVDVPVYLVLSKADRILGFDDFFEQLSREESDQVLGASFRK---EQNGSDAQVVRQ 311

Query: 318  EYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQEALASDQFSTSA 377
            E+ + + R+N  +   +      + R  I  F  Q+  + E L  F + A A +++  ++
Sbjct: 312  EFEELLRRLNSQVILRMHQERDTQRRGRILDFPHQLGQIGERLSLFIELAFAGNRYQRAS 371

Query: 378  LVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVYFTQKLFTHIIYPEA 437
             +RG Y TS  Q     +       R+ GLS +     R+  +   F  +L + +I+PEA
Sbjct: 372  QLRGFYLTSAPQLRETLDPLTAGIGRQLGLSSSALPTFRSGRAR--FINQLLSRVIFPEA 429

Query: 438  GLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNYLNNVQHADTVLTKVNQYKEQF 497
             LA  + R  +         +       LL    W  N+  N +  + +     +   + 
Sbjct: 430  ELAGLDQREVRRIDWGQRALYAGAFGCLLLFGAAWALNFSGNHERLEQLRDIAQRLGSER 489

Query: 498  PTSRSLASQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPKVEETYLNLLE 557
             T  +       L  L+    AT  F   +D+  ++   GLYQG  + P + E Y   LE
Sbjct: 490  KTIEAGDEALRTLKALDASYAATQVFP-PKDEVSWLRRGGLYQGEAVDPTLHEAYRRDLE 548

Query: 558  TRFLPLLMADTIVALNQAETDEEK-LAVLRVYRMLVDKSGRYQDYVMDYFAKYWQKSFSG 616
               LP +       +     D E+ L  LR Y ML     R   ++ D+ A  W    SG
Sbjct: 549  NLLLPRVARQLEAQIRANLNDREQLLGSLRAYLMLNLAERREAAFLKDWLAADWSLRHSG 608

Query: 617  QRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDKVIARAQVELGSMPNDQRVY 676
                Q+ L  H    +  +   A +LN            D ++A+A+ +L S      VY
Sbjct: 609  NAVAQQGLNTHFARLLEES-FAAYQLN------------DNLVAKARAQLRSESLAAVVY 655

Query: 677  RNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMPQSES 736
            R L+  A+ +  P   L + +GP      +  +       IP   T+RG+   F+ Q   
Sbjct: 656  RMLRDQARNL--PDYRLNTQLGP------QASLFVGGDYTIPGFYTQRGYQKLFVAQGAD 707

Query: 737  VSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALNEIDVKYFNDIN 796
            +    L D+WVLG+  +   S  D   L  ++  LY  DY   W  A+ ++++       
Sbjct: 708  LVSEILRDNWVLGEGDS--LSAKDLGRLLVEMEQLYFRDYAAHWSEAIAQLNILPAGSAA 765

Query: 797  DAVMVLENITSNLEPMQRLLRTLDDNTQLYS----------------------------A 828
                 L  +T+   P+ +LL  + +NT+                               A
Sbjct: 766  QGAAQLAGLTAANSPLLQLLLEVRENTRFAGLAEATAGAGELAEAAQGAGGKLGKAAKLA 825

Query: 829  LPKDESALKELLKSPKYKVASMIETPFADLNGMLKPVGSKPAYMTEVLASVDELKSYLKS 888
                E A   LLK+        +E  FA L+ +L   G+    ++  L ++D L+  L S
Sbjct: 826  TAAAEQAQAALLKNTPDTARKTLERRFAPLHQLLDENGAAGPELSASLQALDALQLQLAS 885

Query: 889  IQDAPDVGMAALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLADESWYVVKQEA 948
            +  A     AA +  KAR+     D I  L+  ++ LP+P+   +  LA++SW +V  +A
Sbjct: 886  LAHASAPEQAAFEMAKARMG-GQRDAINQLRSSAARLPQPVGKWLGLLAEDSWSLVLTDA 944

Query: 949  IKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMF 1008
              +L  R+  ++Y +++  L  RYPF+  S  DVALADF  FF   G  D+F+ + LK F
Sbjct: 945  YHYLNQRYRNELYASYRGSLRERYPFSAHSASDVALADFREFFKAQGLADSFFERYLKPF 1004

Query: 1009 IDEN---ISVASDDSAQSIIRKEVLDQIKQAQKIREAFF-NRKGILDVSFSVEPLSLSNN 1064
            +  +     +   D     + +  L Q+ +AQ IR +FF        + F +EP SL ++
Sbjct: 1005 VSGSAGQYQLRRVDGRGLPLSEHFLAQMSRAQTIRRSFFAENPNEPQILFKLEPYSLDSS 1064

Query: 1065 KRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQ---G 1121
              R+      Q L Y HGP       WP    D   S V        +  R + I+   G
Sbjct: 1065 LGRADFRFGNQQLEYRHGPIVQTAFRWPAEADDGRTSLVV-----EELGGRRVGIEKNTG 1119

Query: 1122 PWAFFRLLDQGDV-VSASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSFKLSKTL 1180
            PW+ FRL+D   V   + +  +  K  + G    Y ++A+   NPF   L + FKL  TL
Sbjct: 1120 PWSLFRLIDLMQVDYHSGRDVLMLKADLGGLRANYLLHAQRSPNPFDLALLRGFKLPATL 1179