Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 830 a.a., OmpA/MotB from Pseudomonas syringae pv. syringae B728a

 Score =  172 bits (437), Expect = 8e-47
 Identities = 138/559 (24%), Positives = 240/559 (42%), Gaps = 41/559 (7%)

Query: 21  PILLFTTFILLNVAIWWAGPWLEVAGYKPLESIMARV----VASSLFTLGCLAVWGIWQW 76
           P +L   F L    +W  G  L   G+  + S++  +    + S+ + L  L   G+ Q 
Sbjct: 13  PYVLGVCFFLAIFIVWSIGRAL---GFSSMNSLLTGIGLFLLLSAAYVL--LLYRGVSQH 67

Query: 77  RKLQAFKSEQKREEQLRQDP-----IKVYEQRQEVELNQVMLNMKQSLNKHNYLYALPWY 131
           + L+    +   +  L   P     + +  +R    L ++  N     N  + LYALPWY
Sbjct: 68  QNLEGLLRDDADQAVLNASPADREEVSLLRERLLQSLERLQSNKPNGSNSKDALYALPWY 127

Query: 132 LVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDPDGELLTQ 191
           LV+G   AGK++++ +SG NF ++    A         + DW+   E+VL+D  G  +  
Sbjct: 128 LVVGQPAAGKSTMLYQSGLNFPYAEREGARVAGLGGTRNCDWFFSSEAVLLDTAGRYM-- 185

Query: 192 GNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLLR 251
                  D   E   W  F+  L + R RRPLNG+++ + +  +  ++  +++  A  LR
Sbjct: 186 -------DDQEEAGKWRAFLQLLRQHRQRRPLNGLIVTVSIHDILQSSVEDQERIAKRLR 238

Query: 252 ARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSW 311
            R++E    L  RLPVY+  TK DL+ GF PF++      R EV+G TF     +  D W
Sbjct: 239 ERIQETHALLEVRLPVYLVFTKCDLVPGFVPFYRQLDDVARGEVMGKTFPHKGFEQAD-W 297

Query: 312 LEEFASEYTQFVSRVNGMLPHAVAAP--MTLEERNAIYSFTRQISGLKEILQQFFQEALA 369
            + F     + ++    +    +         +  A+Y F  ++  LK  L  F    L 
Sbjct: 298 GQRFGVAMDELINYWKQIANQQLVLQDIQVTRQDTAVYRFPLELEALKPRLLLFVDALLR 357

Query: 370 SDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTV----YFT 425
           ++ + ++ ++RG YFTS      P        +R+      + + Q A +  V     F 
Sbjct: 358 ANPYQSAEMLRGFYFTSALDADQPEMG---GHTRQVTERFQLESEQEAVDGNVQPHPLFI 414

Query: 426 QKLFTHIIYPE---AGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNYLNNVQH 482
             LF  +I P+     L + N R  + K   +G      S+  LLL   W  +Y NN  +
Sbjct: 415 NSLFRKVIIPDQHLVALYTTNHRERRRKAAWIG----GASLVALLLCSLWGWSYWNNKDN 470

Query: 483 ADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGH 542
             ++ +++ Q   +   +    ++ + LD +        +       P  +   GLY+G+
Sbjct: 471 IQSISSELAQAAAEDSKATGQYTEWQTLDRMRFWTSLYYDRHHDEGVPLRLR-LGLYRGY 529

Query: 543 TIGPKVEETYLNLLETRFL 561
            + P +   Y N LET  L
Sbjct: 530 DVEPLLRTRYFNRLETVML 548