Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1310 a.a., ImcF-related:Protein of unknown function DUF1215 from Pseudomonas syringae pv. syringae B728a

 Score =  145 bits (365), Expect = 3e-38
 Identities = 123/452 (27%), Positives = 203/452 (44%), Gaps = 37/452 (8%)

Query: 125 LYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDP 184
           LY LPWYLV+G+  AGKTSL+ RSG +   +S+  ++          DW+   E+V+ID 
Sbjct: 118 LYDLPWYLVIGMSAAGKTSLLTRSGLS---ASIASSANDTESGTQHCDWYFSPEAVMIDT 174

Query: 185 DGELLTQGNRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERK 244
            G  L     + E         +  F+  L + RS+  +NG+VL + +  L  A+++ER 
Sbjct: 175 AGRYLRDDQSASE---------FAAFLRMLKKQRSKAAVNGLVLVVSLPELLAASSAERN 225

Query: 245 AYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDS 304
                L  R+ E  + L    P+Y+ LTK D L GF   F     ++R++ LG TF ++ 
Sbjct: 226 EMGARLVTRIEEYTDCLDANPPIYLMLTKTDQLPGFNQAFDGMDLNERQQPLGMTFGLNE 285

Query: 305 V--DNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTL--EERNAIYSFTRQISGLKEIL 360
           +  ++L + L+   +     VSR      H  A  + L  +  +A+ +F    + L  IL
Sbjct: 286 INTESLRTVLDRKLANLQAHVSR------HVDAQIIALGADANSALLNFPNYFAELSAIL 339

Query: 361 QQFFQEALASDQFSTSALVRGAYFTSVYQQGVP-TNAFDDAASRRYGLSHA--------- 410
           +QF Q    S+   T  L+RG YFTS  Q     T  ++D  S  + L  A         
Sbjct: 340 EQFLQHFARSNVNGTQLLLRGLYFTSALQTDKQLTPVYEDELSESFVLRPAKPYGAVEEE 399

Query: 411 -INTAQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLLA 469
                 R  +   YF    F  +I+P+  L     R  ++ R +  +   A   A L   
Sbjct: 400 EEEEEHRKISDRSYFITDTFRRVIFPDRDLTLYQSRHGRD-RSIGPIVIAAALFAGLAFI 458

Query: 470 GTWHRNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFFRDK 529
           G    ++  N +    +  ++ + ++    ++ LAS + +   L + + AT+E    +  
Sbjct: 459 GWQALSFQKNREWLANISQQLRELEQSPDRAQRLASGQGL--ELLRNQLATIEKYRTKGV 516

Query: 530 PQYISDFGLYQGHTIGPKVEETYLNLLETRFL 561
           P  +S  GLY+G  I    +  YL  L T+ L
Sbjct: 517 PLQLSG-GLYRGDDIYFATQTAYLQQLRTQAL 547



 Score = 89.4 bits (220), Expect = 2e-21
 Identities = 109/503 (21%), Positives = 200/503 (39%), Gaps = 59/503 (11%)

Query: 674  RVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMPQ 733
            R Y  L+L +     P++ L  L      V    R L   S  +P + T++G++++  P+
Sbjct: 774  REYLRLQLESSRQF-PAIGLNDL------VPMPGRQLLYGSEAVPAIFTRQGWEEFVKPE 826

Query: 734  SESV--SELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALNEIDVKY 791
               +    L     WVL        S   K     +    Y  DYT  W   ++ + V+ 
Sbjct: 827  LIKLVSGNLRNESDWVLDGE--GGDSVVQKANFVREFMSRYKRDYTKVWYTMIDSVGVRR 884

Query: 792  FNDINDAVMVLENITS-NLEPMQRLLRTLDDNTQL---------YSALPKDESALKEL-- 839
            F+D+ +A   L  ++     P++ LL +++DNTQ           + + +D+    ++  
Sbjct: 885  FSDMANATQQLSLLSDVRNSPVKLLLASVNDNTQWDVPAVREAQQTGVKRDDGFWGKVTG 944

Query: 840  LKSPKYKVASMIETPF-----ADLNGMLKPV----------GSKPAYMTEVLASVDELKS 884
            +   K   AS++ +P        L    +PV          G+    M   LA++ +LK 
Sbjct: 945  IFDNKEAAASVLVSPLPAVDDGSLAKRFEPVSRVFATQNAEGADSTIMDRYLAALRKLKV 1004

Query: 885  YLKSIQDAPDVGMAA-------LDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLA 937
             + +IQ + DVG ++       L+   + V  V      T+     GL   L S+ +   
Sbjct: 1005 RMNNIQRSQDVGKSSKQLISETLEGQPSEVTNVRNYVETTVDTSQGGLSTSLQSLFSLPI 1064

Query: 938  DESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAP-NGT 996
              +W  ++  A + +   W + V K ++  +A RYP    S  + ++ D + F  P +G 
Sbjct: 1065 QFAWETLRDPAGEQIAKAWAKQVAKPWEQVMAHRYPIAADSRNEASVKDLQRFVDPESGL 1124

Query: 997  LDNFYNQQLKMFID-ENISVASDDSAQSIIRKEVLDQIKQAQKIREAFFNRKGILDVSFS 1055
            L NF   ++    D E + + S   A  ++  +++  I +A  + E   +     D  F 
Sbjct: 1125 LPNFKRNEIGNLSDGEGLGMGSGAKAAPLVNPKMVSNIDKASSLGEVIASLSD-RDNGFE 1183

Query: 1056 V--EPLSLSNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLR--DSAVSKVTLIPTQTN 1111
            +  EP +   +    +  +DGQ   Y +G        WP T     + +  VTL   +  
Sbjct: 1184 IMLEPSAYFTD---IIFTLDGQEQHYRNGKTSWSRFSWPGTTTAPGARLDVVTLSGERIT 1240

Query: 1112 MSPRSLQIQGPWAFFRLLDQGDV 1134
            +        G W   R+ D   V
Sbjct: 1241 V----FDYTGRWGLLRMNDSARV 1259