Pairwise Alignments

Query, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

Subject, 1329 a.a., type VI secretion protein VasK from Burkholderia phytofirmans PsJN

 Score =  305 bits (782), Expect = 1e-86
 Identities = 313/1257 (24%), Positives = 506/1257 (40%), Gaps = 129/1257 (10%)

Query: 30   LLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLAVWGI-WQWRKLQAFKSEQKR 88
            LL + +W+AGP L      PL S+ ARV+A  +  L   A +G+ W W+K+++ ++  K+
Sbjct: 73   LLCLLVWYAGPLLSFGRAAPLTSVAARVIAIGV-VLALFAAFGLYWLWQKMRSDEAFLKK 131

Query: 89   E----EQLRQDPIKVYEQRQEVELNQVMLNMKQS----------LNKHNYLYALPWYLVL 134
                  +    P     +  E  +N  +  +K                 YLY LPW++ L
Sbjct: 132  ALTFGGKKETPPAAGRLKEVEARINAALARLKSMRTGARGVGRLFQGTRYLYELPWFIAL 191

Query: 135  GLENAGKTSLINRSGQNFVFSSVMRASGQKSENPYSFDWWIGDESVLIDPDG-------- 186
            G  ++GKTS +  +G  F        +   S    + DWW+ +++VLID  G        
Sbjct: 192  GSTSSGKTSALLNAGLAFPIGGATPRTAGASVGTKNIDWWLSNDAVLIDTAGYYTRHGAS 251

Query: 187  --------------------------ELLTQGNRSEENDGALERRL----WLHFVDWLDR 216
                                         TQG  +   D    RR+    W  F+D L R
Sbjct: 252  TQSLPALADKRAENKDDNKDDNAGCGTAATQGTDAAVGDADWRRRVDEDEWHGFLDLLRR 311

Query: 217  TRSRRPLNGIVLALDVAHLATATASERKAYANLLRARLRELMETLSTRLPVYIALTKLDL 276
             R R P+NG VLA+ +  L  +  + R   A++LR RL +L   L  R PVY+ +T++D 
Sbjct: 312  HRPRAPINGAVLAISLDILTASDPAVRATEADMLRERLADLRTRLGIRFPVYLMITQMDR 371

Query: 277  LHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAA 336
            L GF  +F   T+  R ++ GFT  ++              E  Q V+R+ G +   +  
Sbjct: 372  LSGFADYFGSLTEEHRAQMWGFTLPVNGQSARSDLAAVCNGELRQLVTRLAGGVNTRLED 431

Query: 337  PMTLEERNAI----YSFTRQISGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGV 392
               +E R  +     +F    + L E+L Q F ++   D      ++RG YFTS  Q G 
Sbjct: 432  EYDIERRRRLAALPEAFAALCAPLAELLGQLFVDS-RYDATQNHTMLRGVYFTSALQAGQ 490

Query: 393  PTNAFDDAASRRY--GLSHAINT-AQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKN 449
               A      +R   G S   +  A R   +  YF   LFT +++PEA L   N R    
Sbjct: 491  TVTAEPLTVVQRLMAGRSRLFSADAARPAANHSYFLHDLFTKVVFPEAHLVRPNLRWEYR 550

Query: 450  KRRLMGLSFVACSVATLLLAGTWHRNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREV 509
             R L  L      V  + LA     ++ NN  + D +  K      +            V
Sbjct: 551  FRLLRLLGHTLGLVLFVWLAMGMRVSFGNNSDYLDAIARKSQALAAKVTQLYREPKPEAV 610

Query: 510  LDPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPKVEETYLNLLETRFLPLLM--AD 567
             D L + R      G     P     +GLY    +     +TY  L +   LP ++   +
Sbjct: 611  PDTLGEARYLPTWTGLDLSDPDSRFRYGLYSAPGVVEASRDTYRALEDNLLLPSIVHRLE 670

Query: 568  TIVALNQAETD-EEKLAVLRVYRMLVDK----SGRYQDYVMDYFAKYWQKSFSGQRQIQE 622
             ++A + A  D +     LRVY ML DK    S   + +V+D +AK    S  G R    
Sbjct: 671  DVIAESMANKDAKATYGALRVYLMLYDKARFNSTDIKAWVLDDWAKNDSASIFGGR---A 727

Query: 623  ELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDKVIARAQVELGSMPNDQRVYRNLKLS 682
             ++ H++          +  +G++  +  +   D +I +A+  L      QR+Y   K  
Sbjct: 728  SMIEHVE----------QLFSGERIVQSPLIRNDGLIQQARAFLDGSNATQRLYERAKAD 777

Query: 683  AQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMPQ-SESVSELA 741
             Q        L   +GP    VF        S  +P + T  G+ + F  +  E V    
Sbjct: 778  MQKEAPDEFTLLRAVGPQAGTVFTRVSGAPLSRGVPGLFTFDGYQNLFDKRLPEFVQAAR 837

Query: 742  LIDSWVLG-------QSKTAQFSEADKQA---LREKIRDLYVADYTNTWRAALNEIDVKY 791
              D+WV+G       Q KTA+       A   L E IR LY+ +Y   W A L +I    
Sbjct: 838  DDDAWVMGRSYLGEAQKKTAEIVSTVTGADDPLTEAIRRLYLTEYAQQWDAFLGDIRTVA 897

Query: 792  FNDINDAVMVLENITSNLEPMQRLLRTLDDNTQLYSALPKDESALKEL------------ 839
               +   + VL    +   P+ RL R     T L  ++     +L +             
Sbjct: 898  GTSLAFNLQVLRQFAAPDSPLARLARAAVHETTLTQSIAAANGSLLQKTTDQFSQKADKA 957

Query: 840  --LKSPKYKVASMIETPFADLNGMLKPVGSKPAYMTEVLASVDELKSYLKSIQDAPDVGM 897
              +++ +     +++  FA L  M+   GS      E  A+    K+ L  +    +   
Sbjct: 958  LGIRAEERVERELVDGHFAALREMV--TGSADTSAAEAPANAQAGKTGLDGVTSLLNDYY 1015

Query: 898  AALDATKARVKLVN------ADPIYTLKRISSGLPKPLDSMMAKLADESWYVVKQEAIKH 951
              L  T A   + N      +D    LK  ++ +  P   ++  L+ +    V Q   + 
Sbjct: 1016 TTL--TVADNAIANNSMPPASDAAAKLKMAANTMLAPFRDVLLGLSVQGSREVNQGIGQL 1073

Query: 952  LEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMFIDE 1011
            L  +    V  T +  + G YPF P S +DV++ DF   FA  G +D+F+ + L  F+D 
Sbjct: 1074 LSRQMQAVVSDTCRMTVEGNYPFAPDSPRDVSVDDFTRVFAQGGVIDDFFTKNLAPFVDT 1133

Query: 1012 NIS---VASDDSAQSIIRKEVLDQIKQAQKIREAFFNRKG-ILDVSFSVEPLSLSNNKRR 1067
            +       +   A   +R   L+  + A++IR+ FF  +G  L     +    L      
Sbjct: 1134 SAKPWRYRTLPGATDPVRGPDLEPFQHARQIRDVFFGDQGKQLLWKTDIRVPELDPTVTT 1193

Query: 1068 SVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQGPWAFFR 1127
              +++DGQ + Y HGP     + WP   R    +++T  P   N    +L   GPWA  R
Sbjct: 1194 LAIDIDGQTMLYQHGPVAPFAVSWPGP-RGGVHAEMTASPRIRN-ETSTLVTDGPWALMR 1251

Query: 1128 LLDQGDVVSAS---QTSVDFKFIVDGGEMIYRI-NAEADANPFTERLFKSFKLSKTL 1180
            LL +G +V  +   +T  +F F  DG + +  I  A + ANP T  +  +F+   ++
Sbjct: 1252 LLRKGQIVQTATPGRTRAEFDF--DGRKAVLDITGAGSVANPLTSEVLTTFRCPNSM 1306