Pairwise Alignments

Query, 469 a.a., type VI secretion system protein TssA from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., type VI secretion-associated protein, VC_A0119 family from Pseudomonas stutzeri RCH2

 Score =  145 bits (365), Expect = 4e-39
 Identities = 118/484 (24%), Positives = 210/484 (43%), Gaps = 34/484 (7%)

Query: 6   YRQCVAKPISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHAS-VQWDEVEHSTLKLLGEQ 64
           Y +   KP++ SN  G+ +     F+ +E ++ K G+L   + + W +V   +  LL   
Sbjct: 10  YLELARKPVNDSNFAGDDIRYSSEFELLETELAKAGALHQTTGIDWQKVREGSEMLLTSL 69

Query: 65  SKDIKLLVYLLQCLHNQVTPTRLITSFAVMSEFLNQYWNDSYPAPGPRGNLPRRKFFSQM 124
           SKD++   +L   L  + +   L    +V+    + +W + +P               ++
Sbjct: 70  SKDLRAAAWLTWSLFQRESFAGLQAGLSVLQYLCSNHWAELHPRKPRTRAAAINWLLPRL 129

Query: 125 AQRFTTVIEKFDFHHLDEADRQALQAAVEEWQQAVEKQGLSSELVESVVV------RITA 178
            Q F+          +   ++  L   + E   A+E Q LS  L E   +      ++  
Sbjct: 130 EQTFS--------EDVPVGEQLPLFRGLAEQLHALE-QCLSGHLGEDAPLLLPLCRQLDG 180

Query: 179 EIKRAEQRQQ---VTAQSSAERETPSAATPSPAASMVVDHSSDKAAKQTLLKVADFLA-- 233
            +KRA Q Q        + A+ +  ++   +P + +  D  + KA +    +     A  
Sbjct: 181 MVKRASQGQAQPGTVGAAIAQVKQVASQVFAPGSPIENDKEALKAVRNLQEQARPLTAWW 240

Query: 234 -EQEFGIALSIRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQLRHPDLA-LW 291
            +Q       +RL R  +W SI SLP+H  +  T LRG+ AD++ +Y+++      A L 
Sbjct: 241 LKQRTSDLRPLRLSRTLLWLSIDSLPEHNGEQVTALRGIPADKLANYRERFAQGLYADLL 300

Query: 292 RKVEQSLTMAPYWFEGQWMSYTIAQQLGKSDWCQAIAEETQQFLRRLPSLLELKFKGGEP 351
             +E S   AP+W +GQ +++   Q+L      + +  +   FL+RLP L EL+F  G P
Sbjct: 301 VDLENSTARAPFWLDGQRLAWECLQELAAEQAMREVEIQLALFLQRLPRLEELRFHDGIP 360

Query: 352 FVSDSVKEWL-----------ASVGQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALS 400
           F     + W+           A+  Q +  A  SV   W+   +EA  L ++ G+  A+ 
Sbjct: 361 FADAETRAWISGQVMPHVQRAATTRQEEPPAAGSVQPSWELALQEALPLLRKEGLKPAVQ 420

Query: 401 MLNDGLVSAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVE 460
            L  GL  A   R++F+W+L  A L        +A  Q + L  Q+    +  WEP L  
Sbjct: 421 QLKQGLARARGGRERFFWQLSLARLCYQAKKYELAKTQLEALDQQLEASGLGSWEPDLAL 480

Query: 461 QIQR 464
           ++ R
Sbjct: 481 EVLR 484