Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  247 bits (631), Expect = 6e-70
 Identities = 164/432 (37%), Positives = 233/432 (53%), Gaps = 47/432 (10%)

Query: 98  LTSRVGMFDSVWIQPLPMDTRQVHSILLLMGESHGIVSAFENADFLKFIEVFSQQWSLLN 157
           L  R   + S+   PL      V  +LL     H  +     A+ L+ +  F+     L 
Sbjct: 114 LPPRATPWQSLLCVPLGNPQDGVGGLLLCASNQHLDLQGI--AESLRHLGTFA-----LG 166

Query: 158 DMEREEQRRLELKQSLTDIERDSAQRSLANALSRTLIGESAAMQKLREQIVSAANSQLSV 217
            M   ++ R  + +S+ D        SL +A+S  LIG+S AM+K    +    NS  +V
Sbjct: 167 QMHLLQRLRGPVDESVRDTT------SLPSAISYGLIGKSMAMRKTCSLLSKVLNSPYTV 220

Query: 218 MVQGETGTGKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDK 277
           +++GETGTGKE+VA  +H+   R+S  F+  NCAA+PE+LLESELFGY KGAF+GAD D+
Sbjct: 221 LLRGETGTGKEVVARVLHDYGPRRSRAFIVQNCAAVPENLLESELFGYRKGAFTGADRDR 280

Query: 278 QGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNL 337
            GL   ANGGTL LDEIGDMPL+LQAKLLRVL+    RPLG       D R+++ATH +L
Sbjct: 281 AGLFDAANGGTLLLDEIGDMPLSLQAKLLRVLQEGEIRPLGSNVTHHVDVRIIAATHRDL 340

Query: 338 LDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIELLSEHFV-RVFNLQHNTRIRGLNYR 396
              + + +FR+DLYYRL Q+PI LP L  R  DI  L+ HF  +   L     +R  +  
Sbjct: 341 KQLMEEGKFREDLYYRLAQFPIPLPALRQRDGDIIELARHFADKACTLLQRDPVRWSD-A 399

Query: 397 AIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSV 456
           A+D L  YDFPGNVRELK ++E       +G ++    FA  +QT               
Sbjct: 400 ALDHLAAYDFPGNVRELKSIVE-RAVLLCEGGELFVEHFALHIQT-------------PA 445

Query: 457 ETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKR 516
           E   V                   L++ + Q E  ++ + L   +G++A+AA+ LG+P R
Sbjct: 446 ERGRV------------------SLRERMEQIERGLLIDGLRESSGNKARAARELGLPLR 487

Query: 517 TLAYKCLKLEIK 528
           TL Y+  +L ++
Sbjct: 488 TLIYRLTRLNVQ 499