Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Pseudomonas stutzeri RCH2

 Score =  240 bits (613), Expect = 8e-68
 Identities = 144/335 (42%), Positives = 196/335 (58%), Gaps = 33/335 (9%)

Query: 193 LIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSRKSAPFVAINCAA 252
           LIG+S  M+ + + I    +S ++V++ GETGTGKELVA A+H+   R+S PFV  NCA+
Sbjct: 199 LIGDSPRMRAVYQLIGKVLHSPVNVLLTGETGTGKELVARAIHDCGFRRSKPFVVQNCAS 258

Query: 253 IPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLTLQAKLLRVLESR 312
           +PE LLESELFGY KGAF+GAD D+ GL+  ANGGTLFLDEIGDMPL LQAKLLRVL+  
Sbjct: 259 LPEQLLESELFGYRKGAFTGADRDRSGLLDAANGGTLFLDEIGDMPLLLQAKLLRVLQEG 318

Query: 313 TFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPITLPRLAARLEDIE 372
             RPLG  +    D R+V+ATH +L  QV    FR+DL+YRL  +PI LP L  R EDI 
Sbjct: 319 EVRPLGSTETHKVDVRIVAATHRDLRSQVENGLFREDLFYRLSHFPIELPPLRERDEDIL 378

Query: 373 LLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFGCAQTADGTQVEA 432
            L+ HF           +   +  A++ L  Y FPGNVRELK L+E              
Sbjct: 379 RLARHFADKACAFLQRDLCRWSDAALERLAGYAFPGNVRELKGLVE-------------- 424

Query: 433 SCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHDLKQAVSQFEALI 492
                    L C   E  P       E+++L    +L    N      L++ + + E  +
Sbjct: 425 ------RAVLLCEGGELLP-------EHLNLHVEASLDSSLN------LRERMERVERSL 465

Query: 493 ISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEI 527
           + + L +  G++++AA+ LG+P+RTL Y+  +L I
Sbjct: 466 LMDCLRKNGGNQSQAARELGLPRRTLLYRMERLNI 500