Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  219 bits (558), Expect = 2e-61
 Identities = 146/367 (39%), Positives = 205/367 (55%), Gaps = 17/367 (4%)

Query: 166 RLELKQSLTDIERDSAQRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGT 225
           R ++ + + D  R+  +    N L R+L+G S A+Q +R+ +   A++  SV++ GE+GT
Sbjct: 120 RAQVYREMYDQARERGRHREPN-LFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGT 178

Query: 226 GKELVAAAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQAN 285
           GKE+VA  +H  S R+ APFV +NC AIP  LLESELFG+ KGAF+GA + + G    AN
Sbjct: 179 GKEVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELAN 238

Query: 286 GGTLFLDEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKE 345
           GGTLFLDEIGDMPL +Q KLLRVL+ RTF  +G  +  S D R+++ATH NL   +    
Sbjct: 239 GGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIELGS 298

Query: 346 FRQDLYYRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYD 405
           FR+DLYYRL  +PI +  L  R+EDI LL    +     +    IR  N  AI  L ++ 
Sbjct: 299 FREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIR-FNSAAIMSLCRHA 357

Query: 406 FPGNVRELKHLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEP 465
           +PGNVREL +L+E        G        A   +    +  E   +  S+ +E   +E 
Sbjct: 358 WPGNVRELANLVERMAIMHPYG----VIGVAELPKKFRYVDDEDEQMVDSMRSE---IEE 410

Query: 466 SVAL-AGEPNFAVIH-------DLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRT 517
            VA+ +  PNFA          DLK  +   E  +I + L+   G  A+AA+ L I + T
Sbjct: 411 RVAINSNTPNFASGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTT 470

Query: 518 LAYKCLK 524
           L  K  K
Sbjct: 471 LVEKMRK 477



 Score = 25.0 bits (53), Expect = 0.007
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 18/119 (15%)

Query: 11  LVGVRKSHQLALQFVDLLTQGLDLSDSLLLL-PSSDGRLLVPHDPQRQFAWSVTDFDVPF 69
           LVG  ++ Q   Q   ++ Q  D   S+L+L  S  G+ +V     R   +     D PF
Sbjct: 146 LVGTSRAIQHVRQ---MMQQVADTDASVLILGESGTGKEVVA----RNLHYHSKRRDAPF 198

Query: 70  AHVLQSSNAMHLTAEELVFWQSNRTFSQLTSRVGMF----------DSVWIQPLPMDTR 118
             V   +    L   EL   +       +TSR G F          D +   PLPM  +
Sbjct: 199 VPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVK 257