Pairwise Alignments

Query, 530 a.a., AAA family ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  235 bits (600), Expect = 2e-66
 Identities = 153/412 (37%), Positives = 222/412 (53%), Gaps = 33/412 (8%)

Query: 113 LPMDTRQVHSILLLMGESHGIVSAFENADFLKFIEVFSQQWSLLNDMEREEQRRLELKQS 172
           L MD      ++    E    V A ++  F   I+ F      L ++    +R LE++  
Sbjct: 72  LEMDRGTAVILMTAFAEVCTAVQAIKDGAFDYVIKPFD-----LEEIRLLVRRALEIRSM 126

Query: 173 LTDIERDSAQRSLANAL-SRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVA 231
             DI   S +R L+    +  ++ ++  M  LR+ I   A SQ +V++QGE+GTGKELVA
Sbjct: 127 RADIV--SLRRELSERYGAEGILTDNPKMMDLRQTIAKVARSQATVLIQGESGTGKELVA 184

Query: 232 AAVHELSSRKSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFL 291
           A+VH  S R + PF+ +NCAAIPE LLESE FG+ KGAF+GA + ++G   QA  GTLFL
Sbjct: 185 ASVHYGSPRATGPFIRVNCAAIPEGLLESEFFGHEKGAFTGAATRRRGRFEQAEHGTLFL 244

Query: 292 DEIGDMPLTLQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLY 351
           DEIG++   LQ KLLRVL+ R +  +GG + + +D R+V+AT+ +L   +R+  FRQDL+
Sbjct: 245 DEIGEISPALQVKLLRVLQEREYERVGGSEPIPADVRIVAATNRDLEAMIREGTFRQDLF 304

Query: 352 YRLFQYPITLPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVR 411
           +RL    +    L  R EDI LL++HF+  F   +N  IRG +  A+DC+  Y +PGNVR
Sbjct: 305 FRLNVVALKTIPLRDRPEDIRLLADHFLGRFAADNNVVIRGFDPAALDCMLAYPWPGNVR 364

Query: 412 ELKHLIEFGCAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAG 471
           EL + +E     +     +           LP               EN+      A   
Sbjct: 365 ELVNAVERAVVMSTGNVILR--------DDLP---------------ENIICGERAAFVS 401

Query: 472 E--PNFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYK 521
           E  P+   I  L++  S+FE  +I   L R  G+RA+ A  LGI +R L YK
Sbjct: 402 ELLPDGEAIRPLREMASEFETRVIRLALARNGGNRARTAIQLGISRRALLYK 453